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[173971_s_at]

Description CE8611 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F21F3.6 /5_PRIME_EXT_DB=WormBase Gene ID /GB=T01861 /WB_GENE_ID=F21F3.6 /WP=CE09536 /CHR=1 /FEA=Genomic Cluster /DEF=wEST02582 Early embryo, Stratagene (cat. no. 937007) Caenorhabditis elegans cDNA clone CEESW56, mRNA sequence.
Cluster 6grp_highest_10_10 > 96      6grp_high1_10_10 > 58      4grp_highest_8_8 > 31      4grp_high_8_8 > 05      6grp_highest_nonorm > 38      6grp_total > 59      4grp_total > 03      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13008
1 2 3 4 range
A 7298.5
(-2)
P 		6028.7
(-2.7)
P 		5407.5
(-3)
P 		16317.9
(3)
P 		10910
B 6904.2
(-1.5)
P 		5990.9
(-2)
P 		4359.5
(-3)
P 		14600.2
(3)
P 		10241
C 6672.3
(-2.2)
P 		5723.3
(-2.6)
P 		4958.4
(-3)
P 		17367.5
(3)
P 		12409
avr 6958.3
(-1.9) 		5914.3
(-2.5) 		4908.5
(-3) 		16095.2
(3) 		11187

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5724
1 2 3 4 5 6 range
A 8022.2
(2.2)
P 		4512.3
(-2.1)
P 		3749.7
(-3)
P 		4187.3
(-2.5)
P 		5853.9
(-0.4)
P 		8669.8
(3)
P 		4920
B 5932.2
(-0)
P 		5019.6
(-1)
P 		3079.4
(-3)
P 		4698.5
(-1.3)
P 		5317.3
(-0.7)
P 		8802.9
(3)
P 		5724
C 4890.8
(-2.3)
P 		4657.1
(-2.9)
P 		4758.2
(-2.6)
P 		4616.1
(-3)
P 		5086.1
(-1.8)
P 		6970.5
(3)
P 		2354
avr 6281.7
(0.4) 		4729.7
(-1.8) 		3862.4
(-3) 		4500.6
(-2.1) 		5419.1
(-0.8) 		8147.7
(3) 		4285
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2101
1 2 3 4 range
A 2657.4
(3)
P 		1308.7
(-3)
P 		1413.6
(-2.5)
P 		2388.6
(1.8)
P 		1349
B 2201.7
(0.4)
P 		1479.6
(-1.7)
P 		1010.2
(-3)
P 		3111.3
(3)
P 		2101
C 2208.7
(-0.4)
P 		1645.5
(-3)
P 		1728.2
(-2.6)
P 		2928.4
(3)
P 		1283
avr 2355.9
(1.1) 		1477.9
(-2.6) 		1384
(-3) 		2809.4
(3) 		1425

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2535
1 2 3 4 5 6 range
A 1478.8
(0.1)
P 		1604.8
(0.7)
P 		816.6
(-3)
P 		1062
(-1.9)
P 		1766.4
(1.4)
P 		2110.8
(3)
P 		1294
B 2064.1
(0.1)
P 		1670.8
(-0.8)
P 		747.8
(-3)
P 		1244.5
(-1.8)
P 		2160.3
(0.3)
P 		3282.6
(3)
P 		2535
C 1812.8
(0.8)
P 		1421
(-0.9)
P 		1211
(-1.8)
P 		928.3
(-3)
P 		1645.8
(0.1)
P 		2333.4
(3)
P 		1405
avr 1785.2
(0.1) 		1565.5
(-0.7) 		925.1
(-3) 		1078.3
(-2.4) 		1857.5
(0.4) 		2575.6
(3) 		1651
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173971_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22869
Sequence Type Exemplar sequence
Representative Public ID CE8611 NCBI
Target Description CE8611 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F21F3.6 /5_PRIME_EXT_DB=WormBase Gene ID /GB=T01861 /WB_GENE_ID=F21F3.6 /WP=CE09536 /CHR=1 /FEA=Genomic Cluster /DEF=wEST02582 Early embryo, Stratagene (cat. no. 937007) Caenorhabditis elegans cDNA clone CEESW56, mRNA sequence.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059075(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059075 NCBI Caenorhabditis elegans F21F3.6 (F21F3.6) mRNA, complete cds. 11/11 None
SNAP00000035676 ENSEMBL cdna:SNAP chromosome:CEL140:I:4912280:4914045:-1 11/11 None
GENEFINDER00000035684 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4912280:4914045:-1 11/11 None
F21F3.6.2 ENSEMBL cdna:known chromosome:CEL140:I:4911826:4914050:-1 gene:F21F3.6 11/11 None
F21F3.6.1 ENSEMBL cdna:known chromosome:CEL140:I:4911826:4914048:-1 gene:F21F3.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4912280-4914046(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F21F3.6
Entrez Gene 172109 Entrez gene
SwissProt P91269 EMBL-EBI
WormBase CE09536 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB42283 Hypothetical protein F21F3.6 [Caenorhabditis elegans] ref|NP_491476.1| F21F3.6 [Caenorhabditis elegans] 1.0E-104
blast CAE73112 Hypothetical protein CBG20493 [Caenorhabditis briggsae] 7.0E-99
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491476.1 4 55-73,93-115,122-144,164-181
F21F3.6.2 4 55-73,93-115,122-144,164-181
F21F3.6.1 4 55-73,93-115,122-144,164-181
SNAP00000035676 4 55-73,93-115,122-144,164-181
GENEFINDER00000035684 4 55-73,93-115,122-144,164-181
Sequence
Target Sequence 
>C. ELEGANS:173971_S_AT
aatctgggactgcaatgccccgaaatatcgcgtcgcgtgtggacaactccatgtcacaaa
ggcaaccaagtacattggaatgacccaattatttgtcatcgccctcttctcgatctcact
tctgttcgcctacacatcagcactgaaagtggaagacacgacggaaggatcgaaagaatg
gtcaatcaactactacatggcccgttatgtatcctcattgctctcagctctcacacttca
actcggactggttctcatgatgctccacggagttcgtaccaaccgccgatcccttctcat
tccgtacatcgcatttgctgccatagccttattcttggcaatcttccaaatatcacttga
tatcatcaactttgtggataccaagtcgtaccagaatatgaatggagagaatccagcttc
agccattcttattcatttcacaggagttctcgtccatgtctggtgcatgaaggttgtctg
caagtgctattcgttctacggagacaagaaggttgctgaagctatcggccaacaactcca
atcgacatcagtcgccttcgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATCTGGGACTGCAATGCCCCGAAA 198 169 88 Antisense
ATATCGCGTCGCGTGTGGACAACTC 307 21 112 Antisense
GGTCAATCAACTACTACATGGCCCG 592 503 267 Antisense
GATGCTCCACGGAGTTCGTACCAAC 529 413 346 Antisense
TTCTCATTCCGTACATCGCATTTGC 535 689 381 Antisense
GCATTTGCTGCCATAGCCTTATTCT 226 309 398 Antisense
TCCAGCTTCAGCCATTCTTATTCAT 1 591 499 Antisense
TCACAGGAGTTCTCGTCCATGTCTG 187 627 525 Antisense
GTCTGCAAGTGCTATTCGTTCTACG 571 471 563 Antisense
TGAAGCTATCGGCCAACAACTCCAA 332 575 604 Antisense
TCCAATCGACATCAGTCGCCTTCGC 635 555 624 Antisense
Sequence Source Affymetrix Proprietary Database