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[173970_s_at] mitochondrial ribosomal protein S14

Description AU114021_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=T01E8.6 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AU114021 /WB_GENE_ID=T01E8.6 /WP=CE02309 /CHR=2 /FEA=Genomic Cluster /DEF=mitochondrial ribosomal protein S14; Caenorhabditis elegans cDNA clone:yk714c5 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 12      6grp_high1_10_10 > 20      4grp_highest_8_8 > 17      4grp_high_8_8 > 61      6grp_highest_nonorm > 56      6grp_total > 40      4grp_total > 59      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1589
1 2 3 4 range
A 2019.6
(-1.3)
P 		2640.3
(1.8)
P 		2893.5
(3)
P 		1669
(-3)
P 		1225
B 2231.9
(0.4)
P 		2390.9
(1.2)
P 		2780.6
(3)
P 		1507.5
(-3)
P 		1273
C 2122.3
(1.1)
P 		2417.4
(2.6)
P 		2501.7
(3)
P 		1305
(-3)
P 		1197
avr 2124.6
(0.1) 		2482.9
(1.8) 		2725.3
(3) 		1493.8
(-3) 		1232

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1586
1 2 3 4 5 6 range
A 2881.3
(3)
P 		1864.8
(-2)
P 		2356.3
(0.4)
P 		2000.6
(-1.4)
P 		2019.5
(-1.3)
P 		1667
(-3)
P 		1214
B 2208.5
(-0.5)
P 		2320.5
(0.6)
P 		2576.6
(3)
P 		2539.7
(2.7)
P 		1938
(-3)
P 		2342.6
(0.8)
P 		639
C 1613.9
(-1.6)
P 		2703.9
(3)
P 		1978.1
(-0.1)
P 		2441.9
(1.9)
P 		1295.3
(-3)
P 		2342.2
(1.5)
P 		1409
avr 2234.6
(2) 		2296.4
(2.7) 		2303.7
(2.8) 		2327.4
(3) 		1750.9
(-3) 		2117.3
(0.8) 		577
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 652
1 2 3 4 range
A 735.3
(2.8)
P 		573.1
(0.9)
P 		756.4
(3)
P 		244.3
(-3)
P 		512
B 711.7
(3)
P 		590.5
(1.1)
P 		644.3
(2)
P 		321.2
(-3)
P 		391
C 702.5
(1.4)
P 		695
(1.4)
P 		871.9
(3)
P 		220
(-3)
P 		652
avr 716.5
(2.5) 		619.5
(1.3) 		757.5
(3) 		261.8
(-3) 		496

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 468
1 2 3 4 5 6 range
A 531.1
(-0.1)
P 		663.2
(3)
P 		513.1
(-0.5)
P 		507.4
(-0.6)
P 		609.4
(1.7)
P 		405.9
(-3)
P 		257
B 768.5
(0.5)
P 		772.4
(0.6)
P 		625.7
(-3)
P 		672.7
(-1.9)
P 		787.4
(0.9)
P 		873.5
(3)
P 		248
C 598.2
(-0.4)
P 		825.1
(3)
P 		503.5
(-1.8)
P 		491.1
(-1.9)
P 		419.1
(-3)
P 		784.1
(2.4)
P 		406
avr 632.6
(-0.5) 		753.6
(3) 		547.4
(-3) 		557.1
(-2.7) 		605.3
(-1.3) 		687.8
(1.1) 		206
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173970_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.23482
Sequence Type Exemplar sequence
Representative Public ID AU114021 NCBI
Target Description AU114021_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=T01E8.6 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AU114021 /WB_GENE_ID=T01E8.6 /WP=CE02309 /CHR=2 /FEA=Genomic Cluster /DEF=mitochondrial ribosomal protein S14; Caenorhabditis elegans cDNA clone:yk714c5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063807(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063807 NCBI Caenorhabditis elegans T01E8.6 (T01E8.6) mRNA, complete cds. 11/11 None
SNAP00000042905 ENSEMBL cdna:SNAP chromosome:CEL140:II:10240324:10242400:-1 11/11 None
GENEFINDER00000042912 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:10240324:10242400:-1 11/11 None
T01E8.6.1 ENSEMBL cdna:known chromosome:CEL140:II:10240221:10242402:-1 gene:T01E8.6 11/11 None
T01E8.6.2 ENSEMBL cdna:known chromosome:CEL140:II:10240221:10242400:-1 gene:T01E8.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10240291-10241501(-) 100.0 100.0
Public Domain and Genome References
Gene Title mitochondrial ribosomal protein S14
Ensembl T01E8.6
Entrez Gene 174588 Entrez gene
SwissProt P49391 EMBL-EBI
WormBase CE32923 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6412 protein biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
5840 ribosome inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3735 structural constituent of ribosome inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA88746 Hypothetical protein T01E8.6 [Caenorhabditis elegans] ref|NP_496208.2| T01E8.6 [Caenorhabditis elegans] sp|P49391|RT14_CAEEL Putative mitochondrial 40S ribosomal protein S14 4.0E-95
blast CAE72903 Hypothetical protein CBG20218 [Caenorhabditis briggsae] 5.0E-53
Protein Domains
Database ID Description E-Value
Pfam IPR001209 EMBL-EBI Ribosomal protein S14 9.7E-21
Sequence
Target Sequence 
>C. ELEGANS:173970_S_AT
gacattctgggcgagttggcgtcagttgagagatgtcaaacgacgtgagcagattcagga
agtcggcgcggatcgtatgcgtctaaaagctatcaaattcaacacaattctcccgcaagc
gattcgtgacgaagcagccgagaaaatgcaaaaagctcgaaaatacgatcatcctcgtct
gattctcaatatgtgccagttcacaggacgacaacgtggaaagataaagccatacagatt
gagtagacacttgttccgtcgatttgcagatagatcagctctcagtggagtccaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACATTCTGGGCGAGTTGGCGTCAG 73 371 16 Antisense
AGCAGATTCAGGAAGTCGGCGCGGA 146 75 63 Antisense
TCGGCGCGGATCGTATGCGTCTAAA 362 607 78 Antisense
TCAAATTCAACACAATTCTCCCGCA 559 627 108 Antisense
ATTCTCCCGCAAGCGATTCGTGACG 409 9 122 Antisense
GATTCGTGACGAAGCAGCCGAGAAA 622 431 136 Antisense
AATACGATCATCCTCGTCTGATTCT 269 173 177 Antisense
GTCTGATTCTCAATATGTGCCAGTT 409 471 192 Antisense
GTGCCAGTTCACAGGACGACAACGT 645 475 208 Antisense
GTAGACACTTGTTCCGTCGATTTGC 600 455 258 Antisense
AGATCAGCTCTCAGTGGAGTCCAAA 41 67 287 Antisense
Sequence Source Affymetrix Proprietary Database