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[173969_s_at]

Description CE018 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=T08G11.4 /5_PRIME_EXT_DB=WormBase Gene ID /GB=T00018 /WB_GENE_ID=T08G11.4 /WP=CE23958 /CHR=1 /FEA=Genomic Cluster /DEF=wEST00739 Early embryo, Stratagene (cat. no. 937007) Caenorhabditis elegans cDNA clone CEESA59, mRNA sequence.
Cluster 6grp_highest_10_10 > 60      6grp_high1_10_10 > 07      4grp_highest_8_8 > 51      4grp_high_8_8 > 24      6grp_highest_nonorm > 74      6grp_total > 07      4grp_total > 39      6grp_highest_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 475
1 2 3 4 range
A 901.5
(3)
P 		479.6
(-3)
P 		498.2
(-2.7)
P 		514.8
(-2.5)
P 		422
B 828.7
(3)
P 		556.8
(-2.4)
P 		527.8
(-3)
P 		664.3
(-0.3)
P 		301
C 954.4
(3)
P 		525.6
(-3)
P 		555.6
(-2.6)
P 		607.7
(-1.9)
P 		429
avr 894.9
(3) 		520.7
(-3) 		527.2
(-2.9) 		595.6
(-1.8) 		374

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 341
1 2 3 4 5 6 range
A 730.5
(2)
P 		709
(0.7)
P 		723
(1.5)
P 		659.6
(-2.1)
P 		643.4
(-3)
P 		748.8
(3)
P 		105
B 942
(3)
P 		712.8
(-1.2)
P 		620.3
(-2.8)
P 		662.4
(-2.1)
P 		610.7
(-3)
P 		622.5
(-2.8)
P 		331
C 782.2
(2.1)
P 		710.8
(0.1)
P 		755.5
(1.4)
P 		813.2
(3)
P 		600.8
(-3)
P 		627.1
(-2.3)
P 		212
avr 818.2
(3) 		710.9
(-0.2) 		699.6
(-0.6) 		711.7
(-0.2) 		618.3
(-3) 		666.1
(-1.6) 		200
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 253
1 2 3 4 range
A 328.3
(3)
P 		104.1
(-2.3)
P 		130.2
(-1.7)
P 		75.4
(-3)
P 		253
B 264.3
(3)
P 		137.5
(-2.4)
P 		122.3
(-3)
P 		141.6
(-2.2)
P 		142
C 315.9
(3)
P 		151.1
(-1.6)
P 		193.6
(-0.4)
P 		102.5
(-3)
P 		213
avr 302.8
(3) 		130.9
(-2.3) 		148.7
(-1.7) 		106.5
(-3) 		196

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 193
1 2 3 4 5 6 range
A 134.7
(-3)
P 		252.1
(3)
P 		157.4
(-1.8)
P 		167.3
(-1.3)
P 		194.1
(0)
P 		182.3
(-0.6)
P 		117
B 327.8
(3)
P 		237.2
(-0.1)
P 		150.6
(-3)
P 		175.5
(-2.2)
P 		248.1
(0.3)
P 		232.1
(-0.2)
P 		177
C 289.9
(3)
P 		216.9
(-0.5)
P 		192.3
(-1.6)
P 		163.5
(-3)
P 		194.4
(-1.5)
P 		209.9
(-0.8)
P 		126
avr 250.8
(3) 		235.4
(1.9) 		166.8
(-3) 		168.8
(-2.9) 		212.2
(0.2) 		208.1
(-0.1) 		84
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173969_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.23035
Sequence Type Exemplar sequence
Representative Public ID CE018 NCBI
Target Description CE018 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=T08G11.4 /5_PRIME_EXT_DB=WormBase Gene ID /GB=T00018 /WB_GENE_ID=T08G11.4 /WP=CE23958 /CHR=1 /FEA=Genomic Cluster /DEF=wEST00739 Early embryo, Stratagene (cat. no. 937007) Caenorhabditis elegans cDNA clone CEESA59, mRNA sequence.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059999(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059999 NCBI Caenorhabditis elegans T08G11.4 (T08G11.4) mRNA, complete cds. 11/11 None
SNAP00000035560 ENSEMBL cdna:SNAP chromosome:CEL140:I:8910972:8913571:-1 11/11 None
GENEFINDER00000035565 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8910972:8913571:-1 11/11 None
T08G11.4.1 ENSEMBL cdna:known chromosome:CEL140:I:8910882:8913590:-1 gene:T08G11.4 11/11 None
T08G11.4.2 ENSEMBL cdna:known chromosome:CEL140:I:8910882:8913658:-1 gene:T08G11.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8910903-8913503(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T08G11.4
Entrez Gene 172704 Entrez gene
SwissProt Q94013 EMBL-EBI
WormBase CE23958 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02307 Hypothetical protein T08G11.4 [Caenorhabditis elegans] ref|NP_492400.1| T08G11.4 [Caenorhabditis elegans] 0.0
blast CAE66992 Hypothetical protein CBG12390 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:173969_S_AT
tcgtctcgaccaggggatcattatggatcgagaaggatggttctcagttacacctgaagc
aattgctgaacatattgctgatagagtagttcgtaacaatgtttctgttgttgtcgatgc
attcactggagttggaggaaatgctattcaatttgcacttcgtggagctcatgtaattgc
tatcgacatggatcctgttcgacttaagtgtgcacgagaaaatgcacgcgtatacggagt
cgaaaactacatcgacttcatctgtgctgactttttcgatgtcgctgccacgtggcaagc
tgataaaaaacttgctccaaaagtagatgcggtctttctgagcccaccgtggggaggccc
gtcatatttgaaagccaaggagtttgaccttgcaactggatgctgcccaaatggaattga
tatttttgatgtttcattgaagatttgtccgaatattgcatattttctgccaagaaatac
aaaagttagccagctcgtcgagctagctaccaaagca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGTCTCGACCAGGGGATCATTATG 215 605 1084 Antisense
GAAGGATGGTTCTCAGTTACACCTG 671 331 1115 Antisense
GTTGTCGATGCATTCACTGGAGTTG 96 437 1193 Antisense
TTGCACTTCGTGGAGCTCATGTAAT 434 701 1236 Antisense
TGGATCCTGTTCGACTTAAGTGTGC 512 549 1272 Antisense
TACATCGACTTCATCTGTGCTGACT 107 645 1331 Antisense
GTGCTGACTTTTTCGATGTCGCTGC 505 479 1347 Antisense
AAGTAGATGCGGTCTTTCTGAGCCC 413 157 1404 Antisense
CGTGGGGAGGCCCGTCATATTTGAA 559 243 1431 Antisense
CCTTGCAACTGGATGCTGCCCAAAT 469 269 1471 Antisense
GCTCGTCGAGCTAGCTACCAAAGCA 595 299 1576 Antisense
Sequence Source Affymetrix Proprietary Database