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[173964_s_at]

Description CE2182 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=C52E4.6A /5_PRIME_EXT_DB=WormBase Gene ID /GB=T02218 /WB_GENE_ID=C52E4.6A /WP=CE17597 /CHR=5 /FEA=Genomic Cluster /DEF=wEST02939 Early embryo, Stratagene (cat. no. 937007) Caenorhabditis elegans cDNA clone CESAA77, mRNA sequence.
Cluster 6grp_highest_10_10 > 86      6grp_high1_10_10 > 67      4grp_highest_8_8 > 46      4grp_high_8_8 > 02      6grp_highest_nonorm > 96      6grp_total > 67      4grp_total > 14      6grp_highest_sub > Da      6grp_cgc > 38      6grp_high1_sub > Da      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 363
1 2 3 4 range
A 768.9
(1.2)
P 		530
(-2.8)
P 		514.9
(-3)
P 		878.3
(3)
P 		363
B 756.4
(1.8)
P 		520.8
(-3)
P 		597.4
(-1.4)
P 		815.7
(3)
P 		295
C 753.8
(1)
P 		518.6
(-3)
P 		576.5
(-2)
P 		872.2
(3)
P 		354
avr 759.7
(1.3) 		523.1
(-3) 		562.9
(-2.3) 		855.4
(3) 		332

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 632
1 2 3 4 5 6 range
A 815.3
(-1.4)
P 		966.9
(0)
P 		651
(-3)
P 		835
(-1.3)
P 		805.1
(-1.5)
P 		1282.8
(3)
P 		632
B 709.6
(-2.3)
P 		696.4
(-2.5)
P 		705.9
(-2.4)
P 		666.9
(-3)
P 		783.3
(-1.2)
P 		1047.8
(3)
P 		381
C 880.1
(-1)
P 		770.7
(-2.9)
P 		916.5
(-0.4)
P 		765.6
(-3)
P 		794.4
(-2.5)
P 		1114.7
(3)
P 		349
avr 801.7
(-2.3) 		811.3
(-2.2) 		757.8
(-3) 		755.8
(-3) 		794.3
(-2.4) 		1148.4
(3) 		393
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 165
1 2 3 4 range
A 280
(3)
P 		115.1
(-3)
P 		134.6
(-2.3)
P 		128.6
(-2.5)
P 		165
B 241.2
(3)
P 		128.6
(-3)
P 		138.4
(-2.5)
P 		173.8
(-0.6)
P 		113
C 249.5
(3)
P 		149.1
(-2.9)
P 		200.9
(0.2)
P 		147.1
(-3)
P 		102
avr 256.9
(3) 		130.9
(-3) 		158
(-1.7) 		149.8
(-2.1) 		126

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 249
1 2 3 4 5 6 range
A 150.3
(-2.7)
P 		343.9
(3)
P 		141.8
(-3)
P 		211.8
(-0.9)
P 		243
(0)
P 		312.3
(2.1)
P 		202
B 246.9
(-0.9)
P 		231.8
(-1.3)
P 		171.4
(-3)
P 		176.6
(-2.9)
P 		318.3
(1)
P 		390.7
(3)
P 		219
C 326.2
(1.7)
P 		235.2
(-0.8)
P 		233.3
(-0.8)
P 		154
(-3)
P 		257.1
(-0.2)
P 		373.2
(3)
P 		219
avr 241.1
(-1) 		270.3
(0) 		182.2
(-3) 		180.8
(-3) 		272.8
(0.1) 		358.7
(3) 		178
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173964_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25495
Sequence Type Exemplar sequence
Representative Public ID CE2182 NCBI
Target Description CE2182 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=C52E4.6A /5_PRIME_EXT_DB=WormBase Gene ID /GB=T02218 /WB_GENE_ID=C52E4.6A /WP=CE17597 /CHR=5 /FEA=Genomic Cluster /DEF=wEST02939 Early embryo, Stratagene (cat. no. 937007) Caenorhabditis elegans cDNA clone CESAA77, mRNA sequence.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NR_001507(11), NM_073606(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NR_001507 NCBI Caenorhabditis elegans cyl-1, miscRNA. 11/11 None
NM_073606 NCBI Caenorhabditis elegans CYclin L family member (cyl-1) (cyl-1) mRNA, complete cds. 11/11 A 
SNAP00000019788 ENSEMBL cdna:SNAP chromosome:CEL140:V:11993752:11996283:-1 11/11 None
GENEFINDER00000019797 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:11993752:11996283:-1 11/11 None
C52E4.6a ENSEMBL cdna:known chromosome:CEL140:V:11993603:11996312:-1 gene:C52E4.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11993752-11996284(-) 100.0 100.0
Public Domain and Genome References
Ensembl C52E4.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAS64750 cyclin L; C52E4.6a [Caenorhabditis elegans] emb|CAB01416.1| Hypothetical protein C52E4.6a [Caenorhabditis elegans] ref|NP_506007.1| CYclin L family member (cyl-1) [Caenorhabditis elegans] 0.0
blast AAS64750 cyclin L; C52E4.6a [Caenorhabditis elegans] emb|CAB01416.1| Hypothetical protein C52E4.6a [Caenorhabditis elegans] ref|NP_506007.1| CYclin L family member (cyl-1) [Caenorhabditis elegans] 1.0E-123
blast CAE75364 Hypothetical protein CBG23348 [Caenorhabditis briggsae] 4.0E-94
blast CAE75364 Hypothetical protein CBG23348 [Caenorhabditis briggsae] 1.0E-93
blast AAH91090 Ccnl2-prov protein [Xenopus tropicalis] ref|NP_001025623.1| ccnl2-prov protein [Xenopus tropicalis] 5.0E-68
Sequence
Target Sequence 
>C. ELEGANS:173964_S_AT
catcttcatgcgctacaagccagagaccattgcttgtgcctgtatttttttagcagccag
aactgtcgagaatccaatcgcattaccttcaacaccgttccattggtttgaagccttcga
cacatcagatcgagacgtggaggcaattgctcttcaactagtcgggctctacgcaagaag
aacatttcctaactggccacgtatcaaagctgaattggacgcattaagaagtgtgaaaga
tgctgaaatgaaggctgtgaaagcaaaagaaattgctgaaaatttggcaaaaatggcacc
agatggcgagaaaagtacctcaactgtcactatcggtaaagacagcaggaaggtttcacc
agatagaaaaaacggaacaaaagatcgcggagaagcggatcgaggcaagaaagagaagga
tcggcacagaaggagatcgaatgatcgagatggtagaggtgatcggcgtgatcgagacaa
ggatcgtggggataggcggaaggatgagaagaaagatcggaggaagagaaccagatcacg
cagcag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATCTTCATGCGCTACAAGCCAGAG 354 213 826 Antisense
AGCCAGAGACCATTGCTTGTGCCTG 193 85 843 Antisense
GTGCCTGTATTTTTTTAGCAGCCAG 169 479 861 Antisense
GAGAATCCAATCGCATTACCTTCAA 347 391 893 Antisense
TACCTTCAACACCGTTCCATTGGTT 382 643 909 Antisense
GTTTGAAGCCTTCGACACATCAGAT 512 451 931 Antisense
GCAATTGCTCTTCAACTAGTCGGGC 404 323 968 Antisense
ACTAGTCGGGCTCTACGCAAGAAGA 137 261 982 Antisense
AACATTTCCTAACTGGCCACGTATC 161 137 1006 Antisense
AAAGTACCTCAACTGTCACTATCGG 118 123 1137 Antisense
GGAAGAGAACCAGATCACGCAGCAG 488 531 1347 Antisense
Sequence Source Affymetrix Proprietary Database