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[173962_s_at] Immunoglobulin domain ; Fibronectin type III domain

Description CEK028F4R_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=C26G2.1 /5_PRIME_EXT_DB=WormBase Gene ID /GB=D33282 /WB_GENE_ID=C26G2.1 /WP=CE19703 /CHR=X /FEA=Genomic Cluster /DEF=Immunoglobulin domain ; Fibronectin type III domain; C.elegans cDNA clone yk28f4 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 31      6grp_total > 34      4grp_total > 53      6grp_cgc > 34      6grp_high1_sub > 03      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      6grp_rule_based > S2      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 181
1 2 3 4 range
A 324.5
(3)
M 		231.8
(-0.1)
M 		229.5
(-0.2)
A 		143.9
(-3)
A 		181
B 295.7
(2)
P 		316.7
(3)
A 		264.1
(0.5)
A 		189.3
(-3)
A 		127
C 297.1
(3)
A 		250.8
(0.2)
A 		196.9
(-3)
A 		230.6
(-1)
P 		100
avr 305.8
(3) 		266.4
(1) 		230.2
(-0.8) 		187.9
(-3) 		118

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 603
1 2 3 4 5 6 range
A 320.3
(1.1)
P 		381.2
(3)
P 		350.2
(2)
M 		185.7
(-3)
P 		192.6
(-2.8)
P 		202.6
(-2.5)
A 		196
B 556.2
(0.6)
P 		760.7
(3)
P 		571
(0.8)
P 		251.4
(-2.9)
P 		259.6
(-2.8)
M 		241.7
(-3)
A 		519
C 395.1
(2.2)
P 		322.2
(0.6)
P 		429.1
(3)
P 		278
(-0.3)
P 		191.5
(-2.3)
M 		157.8
(-3)
P 		271
avr 423.9
(1.7) 		488
(3) 		450.1
(2.2) 		238.4
(-2.2) 		214.6
(-2.7) 		200.7
(-3) 		287
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 97
1 2 3 4 range
A 118.2
(3)
M 		50.3
(-1.2)
M 		60
(-0.6)
A 		21.1
(-3)
A 		97
B 94.3
(3)
P 		78.2
(1.2)
A 		61.2
(-0.7)
A 		40.3
(-3)
A 		54
C 98.4
(3)
A 		72.1
(0.3)
A 		68.6
(-0)
A 		38.9
(-3)
P 		60
avr 103.6
(3) 		66.9
(-0.1) 		63.3
(-0.4) 		33.4
(-3) 		70

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 206
1 2 3 4 5 6 range
A 59
(-2.2)
P 		135.6
(3)
P 		76.3
(-1)
M 		47.1
(-3)
P 		58.1
(-2.3)
P 		49.3
(-2.9)
A 		89
B 193.5
(1.1)
P 		253.2
(3)
P 		138.7
(-0.7)
P 		66.6
(-3)
P 		105.5
(-1.7)
M 		90.1
(-2.2)
A 		187
C 146.4
(3)
P 		98.3
(-0.1)
P 		109.2
(0.6)
P 		55.9
(-2.8)
P 		62
(-2.4)
M 		52.8
(-3)
P 		94
avr 133
(1.3) 		162.4
(3) 		108.1
(-0.1) 		56.5
(-3) 		75.2
(-1.9) 		64.1
(-2.6) 		106
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173962_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26013
Sequence Type Exemplar sequence
Representative Public ID CEK028F4R NCBI
Target Description CEK028F4R_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=C26G2.1 /5_PRIME_EXT_DB=WormBase Gene ID /GB=D33282 /WB_GENE_ID=C26G2.1 /WP=CE19703 /CHR=X /FEA=Genomic Cluster /DEF=Immunoglobulin domain ; Fibronectin type III domain; C.elegans cDNA clone yk28f4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078034(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078034 NCBI Caenorhabditis elegans SYnaptoGenesis abnormal family member (syg-2) (syg-2) mRNA, complete cds. 11/11 None
GENEFINDER00000005713 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:14654909:14662494:1 11/11 None
C26G2.1 ENSEMBL cdna:known chromosome:CEL140:X:14654909:14662760:1 gene:C26G2.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000005710 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14654909-14662495(+) 100.0 100.0
Public Domain and Genome References
Gene Title Immunoglobulin domain ; Fibronectin type III domain
Gene Symbol syg-2
Ensembl C26G2.1
Entrez Gene 181561 Entrez gene
SwissProt Q9U3P2 EMBL-EBI
WormBase CE19703 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1637539_A_AT hibris dm
DROSGENOME1:147231_AT hibris dm
Protein Similarities
Method ID Description E-Value
blast CAB63432 Hypothetical protein C26G2.1 [Caenorhabditis elegans] ref|NP_510435.1| SYnaptoGenesis abnormal family member (syg-2) [Caenorhabditis elegans] 0.0
blast CAE63211 Hypothetical protein CBG07568 [Caenorhabditis briggsae] 0.0
blast AAO41390 CG7449-PB, isoform B [Drosophila melanogaster] ref|NP_788355.1| CG7449-PB, isoform B [Drosophila melanogaster] 1.0E-111
blast AAO41390 CG7449-PB, isoform B [Drosophila melanogaster] ref|NP_788355.1| CG7449-PB, isoform B [Drosophila melanogaster] 1.0E-107
Protein Domains
Database ID Description E-Value
Pfam IPR003961 EMBL-EBI Fibronectin, type III 1.0E-12
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.4E-7
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.0040
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 8.9E-8
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.0088
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.86
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.6
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.6E-7
Pfam IPR003961 EMBL-EBI Fibronectin, type III 1.0E-12
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.6E-7
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510435.1 1 1084-1106
C26G2.1 1 1084-1106
GENEFINDER00000005713 1 1113-1135
Sequence
Target Sequence 
>C. ELEGANS:173962_S_AT
gaaactgaccacttggattccatacattttgattttcatcgttcttttcatgctgttgaa
tgttgttatttgctgtttcgtatgcaacaggacgaaaaagaggaagttaagagggaaaac
cgaaatggcacgaacagcaattaacggcggtgacgtgcggcaagttcaaatgtacggaac
aatgatgggaaatgatggaatgtcacggcgcgatattgatgaccgcccggaaatgagcga
ggatgaacattccgtgcgaacgatgattgaagtctcacccaatggttacatgcaaccaat
tgagcccatgctttatgaaagcactggcctactggaatacgattatcaaaggcggagcta
catgggcagttcacaaggtacaaggagtatgacgtatgcaaatgttccatatccggaacc
acctcagccgagctaccactcaaactggaattccctgcagcggcagtcaaacaataacac
aagtccgcaacatcatctttcaacgttcataaatccgaacatgggagttcgagcggggcc
gatcaatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAACTGACCACTTGGATTCCATAC 509 357 3248 Antisense
GATTTTCATCGTTCTTTTCATGCTG 452 429 3278 Antisense
TAACGGCGGTGACGTGCGGCAAGTT 167 637 3389 Antisense
GGCGCGATATTGATGACCGCCCGGA 363 541 3454 Antisense
GAAGTCTCACCCAATGGTTACATGC 677 335 3516 Antisense
GCAACCAATTGAGCCCATGCTTTAT 540 319 3539 Antisense
GAAAGCACTGGCCTACTGGAATACG 454 359 3564 Antisense
GGAGCTACATGGGCAGTTCACAAGG 206 521 3601 Antisense
CTCAAACTGGAATTCCCTGCAGCGG 185 227 3686 Antisense
ACACAAGTCCGCAACATCATCTTTC 268 111 3724 Antisense
GGAGTTCGAGCGGGGCCGATCAATT 607 517 3771 Antisense
Sequence Source Affymetrix Proprietary Database