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[173961_s_at]

Description CE5931 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=W02F12.4 /5_PRIME_EXT_DB=WormBase Gene ID /GB=T01593 /WB_GENE_ID=W02F12.4 /WP=CE14478 /CHR=5 /FEA=Genomic Cluster /DEF=wEST02314 Early embryo, Stratagene (cat. no. 937007) Caenorhabditis elegans cDNA clone CEESS87, mRNA sequence.
Cluster 6grp_highest_10_10 > 77      6grp_high1_10_10 > 76      4grp_highest_8_8 > 38      4grp_high_8_8 > 03      6grp_highest_nonorm > 95      6grp_total > 67      4grp_total > 14      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 544
1 2 3 4 range
A 786.1
(1.2)
P 		479
(-2.3)
P 		414.7
(-3)
P 		943.8
(3)
P 		529
B 603.1
(-1)
P 		436.4
(-2.9)
P 		430
(-3)
P 		958.4
(3)
P 		528
C 797.9
(2.3)
P 		456.7
(-3)
P 		561
(-1.4)
P 		842.3
(3)
P 		386
avr 729
(0.6) 		457.4
(-3) 		468.6
(-2.9) 		914.8
(3) 		457

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 731
1 2 3 4 5 6 range
A 482
(-3)
P 		642.6
(-1.1)
P 		583.1
(-1.8)
P 		680.8
(-0.6)
P 		657
(-0.9)
P 		985.9
(3)
P 		504
B 605.4
(-1.8)
P 		457.6
(-3)
P 		778.8
(-0.3)
P 		462.8
(-3)
P 		626.6
(-1.6)
P 		1176.4
(3)
P 		719
C 596.7
(-2.3)
P 		521.1
(-2.9)
P 		613.4
(-2.1)
P 		513
(-3)
P 		595.6
(-2.3)
P 		1188.8
(3)
P 		676
avr 561.4
(-2.8) 		540.4
(-3) 		658.4
(-1.8) 		552.2
(-2.9) 		626.4
(-2.1) 		1117
(3) 		577
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 187
1 2 3 4 range
A 286.2
(3)
P 		104
(-3)
P 		108.4
(-2.9)
P 		138.1
(-1.9)
P 		182
B 192.3
(2.3)
P 		107.8
(-2.5)
P 		99.6
(-3)
P 		204.2
(3)
P 		105
C 264.1
(3)
P 		131.3
(-3)
P 		195.5
(-0.1)
P 		142
(-2.5)
P 		133
avr 247.5
(3) 		114.4
(-3) 		134.5
(-2.1) 		161.4
(-0.9) 		133

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 350
1 2 3 4 5 6 range
A 88.8
(-3)
P 		228.6
(2.5)
P 		127
(-1.5)
P 		172.7
(0.3)
P 		198.2
(1.3)
P 		240
(3)
P 		151
B 210.7
(-1.3)
P 		152.3
(-2.4)
P 		189.1
(-1.7)
P 		122.6
(-3)
P 		254.6
(-0.5)
P 		438.7
(3)
P 		316
C 221.2
(-0.6)
P 		159
(-1.9)
P 		156.1
(-1.9)
P 		103.2
(-3)
P 		192.7
(-1.2)
P 		398
(3)
P 		295
avr 173.6
(-1.9) 		180
(-1.7) 		157.4
(-2.3) 		132.8
(-3) 		215.2
(-0.8) 		358.9
(3) 		226
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173961_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25144
Sequence Type Exemplar sequence
Representative Public ID CE5931 NCBI
Target Description CE5931 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=W02F12.4 /5_PRIME_EXT_DB=WormBase Gene ID /GB=T01593 /WB_GENE_ID=W02F12.4 /WP=CE14478 /CHR=5 /FEA=Genomic Cluster /DEF=wEST02314 Early embryo, Stratagene (cat. no. 937007) Caenorhabditis elegans cDNA clone CEESS87, mRNA sequence.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029011(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029011 NCBI Caenorhabditis elegans W02F12.4a (W02F12.4) mRNA, complete cds. 11/11 None
SNAP00000016554 ENSEMBL cdna:SNAP chromosome:CEL140:V:6707280:6709591:-1 11/11 None
GENEFINDER00000016564 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:6707280:6709538:-1 11/11 None
W02F12.4a ENSEMBL cdna:known chromosome:CEL140:V:6707162:6709575:-1 gene:W02F12.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
179062 3 1 NM_001029011 173961_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6707215-6709577(-) 100.0 100.0
Public Domain and Genome References
Ensembl W02F12.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_001024182 W02F12.4a [Caenorhabditis elegans] gb|AAC04460.2| Hypothetical protein W02F12.4a [Caenorhabditis elegans] 0.0
blast CAE71936 Hypothetical protein CBG19000 [Caenorhabditis briggsae] 1.0E-167
blast CAE71936 Hypothetical protein CBG19000 [Caenorhabditis briggsae] 1.0E-142
blast NP_001024184 W02F12.4c [Caenorhabditis elegans] gb|AAT92057.1| Hypothetical protein W02F12.4c [Caenorhabditis elegans] 6.0E-60
Sequence
Target Sequence 
>C. ELEGANS:173961_S_AT
gatctacgcgtcatctacggagagctgcagcgaaacgaagtgctcgaagagtttggaatt
cctcaggatatctactttattgacagttattggatggcgagagaaatcgaggatacgata
gtcaaagaacttgcaacggtctgcaaatatatcaagtttccgaaagtaaaaatcgaagaa
gttgacgaatcggagcgtgtcgtaatagatgattccgtcgaagaaatagttcaaaatgat
gaaccaaaggaaacggatcatcctgcgaatattctggattgggagaaattttcggcttcc
ctcaaaaaacgaattcgaagagatggatttgtgagaactggagctgggagttggacatac
aagcataccaacaacaagttcagcttgccagttctgtacgaagatctcgttggtggaaaa
tatactgctcactacgctcaacaagataccgaagctctgatgcatgtttgccttagttac
ggaaatgatttcactcgatatgccaataattcggcttctgcttta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCTACGCGTCATCTACGGAGAGC 426 419 725 Antisense
AATTCCTCAGGATATCTACTTTATT 234 177 781 Antisense
GCGTGTCGTAATAGATGATTCCGTC 182 293 919 Antisense
AACGGATCATCCTGCGAATATTCTG 497 143 976 Antisense
TGGGAGAAATTTTCGGCTTCCCTCA 386 553 1004 Antisense
AGTTCAGCTTGCCAGTTCTGTACGA 18 65 1101 Antisense
CTCACTACGCTCAACAAGATACCGA 309 227 1152 Antisense
ACCGAAGCTCTGATGCATGTTTGCC 508 89 1172 Antisense
GCATGTTTGCCTTAGTTACGGAAAT 584 305 1186 Antisense
GAAATGATTTCACTCGATATGCCAA 690 361 1206 Antisense
TGCCAATAATTCGGCTTCTGCTTTA 291 585 1225 Antisense
Sequence Source Affymetrix Proprietary Database