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[173960_s_at]

Description CE6121 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=C50F4.11 /5_PRIME_EXT_DB=WormBase Gene ID /GB=T01612 /WB_GENE_ID=C50F4.11 /WP=CE28212 /CHR=5 /FEA=Genomic Cluster /DEF=wEST02333 Early embryo, Stratagene (cat. no. 937007) Caenorhabditis elegans cDNA clone CEEST23, mRNA sequence.
Cluster 6grp_highest_10_10 > 49      6grp_high1_10_10 > 93      4grp_highest_8_8 > 52      4grp_high_8_8 > 16      6grp_highest_nonorm > 65      6grp_total > 84      4grp_total > 39      6grp_highest_sub > 04_05_06      6grp_high1_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 624
1 2 3 4 range
A 1091.3
(3)
P 		635
(-1.5)
P 		481.3
(-3)
P 		735.3
(-0.5)
P 		610
B 1104.9
(3)
P 		718.6
(-2.5)
P 		685.9
(-3)
P 		836
(-0.9)
P 		419
C 1096.3
(3)
P 		633.8
(-3)
P 		759.7
(-1.4)
P 		755.1
(-1.4)
P 		463
avr 1097.5
(3) 		662.5
(-2.7) 		642.3
(-3) 		775.5
(-1.2) 		455

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 843
1 2 3 4 5 6 range
A 801.9
(-3)
P 		1127
(0.8)
P 		931.5
(-1.5)
P 		1317.3
(3)
P 		1182.3
(1.4)
P 		1196.4
(1.6)
P 		515
B 955.5
(-0.9)
P 		803.7
(-3)
P 		806.2
(-3)
P 		1172.8
(2.1)
P 		1149.8
(1.8)
P 		1237.7
(3)
P 		434
C 887.1
(-2.1)
P 		761.9
(-3)
P 		1453.5
(1.9)
P 		1604.7
(3)
P 		1311.7
(0.9)
P 		1296.8
(0.8)
P 		843
avr 881.5
(-3) 		897.5
(-2.8) 		1063.7
(-0.7) 		1364.9
(3) 		1214.6
(1.1) 		1243.6
(1.5) 		483
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 290
1 2 3 4 range
A 397.3
(3)
P 		137.8
(-2.4)
P 		125.8
(-2.6)
P 		107.6
(-3)
P 		290
B 352.3
(3)
P 		177.5
(-2.4)
P 		158.9
(-3)
P 		178.2
(-2.4)
P 		193
C 362.9
(3)
P 		182.2
(-1.6)
P 		264.8
(0.5)
P 		127.3
(-3)
P 		236
avr 370.8
(3) 		165.8
(-2.3) 		183.2
(-1.8) 		137.7
(-3) 		233

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 319
1 2 3 4 5 6 range
A 147.8
(-3)
P 		400.8
(3)
P 		202.9
(-1.7)
P 		334.1
(1.4)
P 		356.8
(2)
P 		291.3
(0.4)
P 		253
B 332.5
(0)
P 		267.5
(-1.4)
P 		195.8
(-3)
P 		310.6
(-0.5)
P 		467.2
(3)
P 		461.5
(2.9)
P 		271
C 328.8
(-0.1)
P 		232.5
(-3)
P 		369.9
(1.1)
P 		322.7
(-0.3)
P 		424.5
(2.7)
P 		434.1
(3)
P 		202
avr 269.7
(-2.5) 		300.3
(-1.3) 		256.2
(-3) 		322.5
(-0.5) 		416.2
(3) 		395.6
(2.2) 		160
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173960_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25131
Sequence Type Exemplar sequence
Representative Public ID CE6121 NCBI
Target Description CE6121 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=C50F4.11 /5_PRIME_EXT_DB=WormBase Gene ID /GB=T01612 /WB_GENE_ID=C50F4.11 /WP=CE28212 /CHR=5 /FEA=Genomic Cluster /DEF=wEST02333 Early embryo, Stratagene (cat. no. 937007) Caenorhabditis elegans cDNA clone CEEST23, mRNA sequence.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073060(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073060 NCBI Caenorhabditis elegans C50F4.16 (C50F4.16) mRNA, complete cds. 11/11 None
SNAP00000009314 ENSEMBL cdna:SNAP chromosome:CEL140:V:9542549:9544190:-1 11/11 None
GENEFINDER00000009332 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9542549:9544190:-1 11/11 None
C50F4.16.1 ENSEMBL cdna:known chromosome:CEL140:V:9542453:9544190:-1 gene:C50F4.16 11/11 None
C50F4.16.2 ENSEMBL cdna:known chromosome:CEL140:V:9542453:9544191:-1 gene:C50F4.16 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9542509-9546809(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C50F4.16
Entrez Gene 179337 Entrez gene
SwissProt Q95ZW9 EMBL-EBI
WormBase CE28213 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC42268 Hypothetical protein C50F4.16 [Caenorhabditis elegans] ref|NP_505461.1| C50F4.16 [Caenorhabditis elegans] 0.0
blast CAE72193 Hypothetical protein CBG19301 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000086 EMBL-EBI NUDIX hydrolase 1.6E-14
Sequence
Target Sequence 
>C. ELEGANS:173960_S_AT
gggatttagccttatgtccaaacacagctacatgtattcttgtagatatggtgaagaaag
aattgattttcttgcagaaactccgtgcagcggtgtttgttggaaaaaatcgttttttga
aagaaaacattggaaagcctctggatgagattgatttctcgaattccgatcctaaaattg
catacacgcttgaactcgttgttaaccgtgttccggatttcgacgatcctcgaaaattcg
ctcgaatctcagtgaagcaacttggctacgatcttccagaagattcgtttaaactccaag
caaagtgtattccgggaatcggtcaatctggagacacccaatctatttttgccgtggatg
ttagtaaagcacgactttgtgagaaggaagaagatgaagacattgaagaacttcgtgttt
cttttgcggatttgccgtctctgtaccgacaacacaatataggaccaccaactacttact
atgccattggatttgctcttgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGATTTAGCCTTATGTCCAAACAC 639 495 2763 Antisense
GATTGATTTCTCGAATTCCGATCCT 295 435 2911 Antisense
TGAACTCGTTGTTAACCGTGTTCCG 303 573 2953 Antisense
TGTTCCGGATTTCGACGATCCTCGA 489 557 2971 Antisense
GCAACTTGGCTACGATCTTCCAGAA 368 319 3019 Antisense
GAATCGGTCAATCTGGAGACACCCA 437 327 3078 Antisense
GACACCCAATCTATTTTTGCCGTGG 535 367 3095 Antisense
GAACTTCGTGTTTCTTTTGCGGATT 50 351 3170 Antisense
TTTTGCGGATTTGCCGTCTCTGTAC 632 677 3184 Antisense
TAGGACCACCAACTACTTACTATGC 347 653 3222 Antisense
CTATGCCATTGGATTTGCTCTTGAT 282 225 3241 Antisense
Sequence Source Affymetrix Proprietary Database