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[173958_at]

Description CEK009D3F /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=Y37A1B.3 /5_PRIME_EXT_DB=WormBase Gene ID /GB=D28076 /WB_GENE_ID=Y37A1B.3 /WP=CE19073 /CHR=4 /FEA=Genomic Cluster /DEF=PhoX homologous domain, present in p47phox and p40phox.; C.elegans cDNA clone yk9d3 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 97      6grp_high1_10_10 > 79      4grp_highest_8_8 > 27      4grp_high_8_8 > 56      6grp_highest_nonorm > 87      6grp_total > 49      4grp_total > 63      6grp_highest_sub > Cu      6grp_cgc > 09      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 523
1 2 3 4 range
A 1105.4
(3)
P 		678.2
(-3)
P 		1054.2
(2.3)
P 		748.7
(-2)
P 		427
B 1145.6
(2)
P 		873.1
(-3)
P 		1201
(3)
P 		1017.8
(-0.4)
P 		328
C 854.2
(-3)
P 		951.7
(1)
P 		957.4
(1.3)
P 		999
(3)
P 		145
avr 1035.1
(2.1) 		834.3
(-3) 		1070.9
(3) 		921.8
(-0.8) 		237

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1233
1 2 3 4 5 6 range
A 1596.8
(3)
P 		927.8
(-2.2)
P 		827.7
(-3)
P 		911.7
(-2.3)
P 		1179.4
(-0.3)
P 		1453.4
(1.9)
P 		769
B 1194.7
(0.5)
P 		784
(-1.5)
P 		477.2
(-3)
P 		838.8
(-1.2)
P 		1432.3
(1.6)
P 		1710.2
(3)
P 		1233
C 1182.8
(0.7)
P 		766.2
(-2.7)
P 		812.8
(-2.3)
P 		730.2
(-3)
P 		1348.2
(2.1)
P 		1456.9
(3)
P 		727
avr 1324.8
(1.5) 		826
(-2.1) 		705.9
(-3) 		826.9
(-2.1) 		1320
(1.4) 		1540.2
(3) 		834
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 293
1 2 3 4 range
A 402.5
(3)
P 		147.2
(-2.2)
P 		275.6
(0.4)
P 		109.6
(-3)
P 		293
B 365.3
(3)
P 		215.6
(-3)
P 		278.3
(-0.5)
P 		216.9
(-2.9)
P 		150
C 282.8
(1.2)
P 		273.6
(0.8)
P 		333.7
(3)
P 		168.5
(-3)
P 		165
avr 350.2
(3) 		212.1
(-1.5) 		295.9
(1.2) 		165
(-3) 		185

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 522
1 2 3 4 5 6 range
A 294.4
(0.9)
P 		330
(2.1)
P 		180.3
(-3)
P 		231.2
(-1.3)
P 		355.9
(3)
P 		353.8
(2.9)
P 		176
B 415.7
(0.4)
P 		261
(-1.3)
P 		115.9
(-3)
P 		222.2
(-1.8)
P 		581.9
(2.4)
P 		637.7
(3)
P 		522
C 438.4
(2.1)
P 		233.8
(-1.5)
P 		206.9
(-1.9)
P 		146.9
(-3)
P 		436.3
(2.1)
P 		487.7
(3)
P 		341
avr 382.8
(1) 		274.9
(-1) 		167.7
(-3) 		200.1
(-2.4) 		458
(2.4) 		493.1
(3) 		325
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173958_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.24823
Sequence Type Exemplar sequence
Representative Public ID CEK009D3F NCBI
Target Description CEK009D3F /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=Y37A1B.3 /5_PRIME_EXT_DB=WormBase Gene ID /GB=D28076 /WB_GENE_ID=Y37A1B.3 /WP=CE19073 /CHR=4 /FEA=Genomic Cluster /DEF=PhoX homologous domain, present in p47phox and p40phox.; C.elegans cDNA clone yk9d3 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070294(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070294 NCBI Caenorhabditis elegans Lateral Signaling Target family member (lst-4) (lst-4) mRNA, complete cds. 11/11 None
Y37A1B.2b ENSEMBL cdna:known chromosome:CEL140:IV:14061001:14068513:-1 gene:Y37A1B.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
178361 4 1 NM_070292 193871_s_at (11)
NM_070294 173958_at (11), 185377_at (11), 193871_s_at (11)
NM_182290 193871_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:14061024-14063187(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y37A1B.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA19487 Hypothetical protein Y37A1B.2b [Caenorhabditis elegans] ref|NP_502695.2| Lateral Signaling Target family member (lst-4) [Caenorhabditis elegans] 0.0
blast CAD56253 Hypothetical protein Y37A1B.2c [Caenorhabditis elegans] ref|NP_502693.2| Lateral Signaling Target family member (lst-4) [Caenorhabditis elegans] 0.0
blast CAD56254 Hypothetical protein Y37A1B.2d [Caenorhabditis elegans] ref|NP_872090.1| Lateral Signaling Target family member (lst-4) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001683 EMBL-EBI Phox-like 5.2E-29
Sequence
Target Sequence 
>C. ELEGANS:173958_AT
ttcccccatcattaaaatcgagctagcttctttttttttgagtcaaattccgaatgttca
tatattttcttcctactttctaatccataattttttgtgcaattctactaaattcccgtg
atttcaactcgccacattctttgtaccatatatgatgattgcttcgttcacatttgaaaa
aaatcccctttttgaatatttattcgcctggtttccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCCCCCATCATTAAAATCGAGCTA 308 697 1085 Antisense
ATCGAGCTAGCTTCTTTTTTTTTGA 293 37 1101 Antisense
GAGTCAAATTCCGAATGTTCATATA 180 399 1124 Antisense
TTCTTCCTACTTTCTAATCCATAAT 282 689 1151 Antisense
AATCCATAATTTTTTGTGCAATTCT 471 167 1166 Antisense
GTGCAATTCTACTAAATTCCCGTGA 338 481 1181 Antisense
CTAAATTCCCGTGATTTCAACTCGC 249 227 1192 Antisense
CTCGCCACATTCTTTGTACCATATA 689 233 1212 Antisense
GTACCATATATGATGATTGCTTCGT 65 459 1227 Antisense
GATGATTGCTTCGTTCACATTTGAA 262 411 1238 Antisense
TGAATATTTATTCGCCTGGTTTCCC 314 575 1277 Antisense
Sequence Source Affymetrix Proprietary Database