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[173957_s_at]

Description CEXT00191 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=B0024.10 /5_PRIME_EXT_DB=WormBase Gene ID /GB=M79654 /WB_GENE_ID=B0024.10 /WP=CE05154 /CHR=5 /FEA=Genomic Cluster /DEF=wEST00191 Mixed stage, Stratagene (cat. no. 937006) Caenorhabditis elegans cDNA clone CEMSB95, mRNA sequence.
Cluster 6grp_highest_10_10 > 68      6grp_high1_10_10 > 96      4grp_highest_8_8 > 49      4grp_high_8_8 > 41      6grp_highest_nonorm > 94      6grp_total > 76      4grp_total > 54      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 451
1 2 3 4 range
A 607.6
(3)
P 		516.9
(1.2)
P 		451.1
(-0.1)
P 		306.2
(-3)
P 		301
B 603.3
(3)
P 		522.2
(1)
P 		376.6
(-2.7)
P 		364.8
(-3)
P 		239
C 757
(3)
P 		390.1
(-3)
P 		460.2
(-1.9)
P 		491.1
(-1.3)
P 		367
avr 656
(3) 		476.4
(-1) 		429.3
(-2.1) 		387.4
(-3) 		269

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 635
1 2 3 4 5 6 range
A 481.5
(-3)
P 		496
(-2.7)
P 		589.2
(-1)
P 		619.2
(-0.4)
P 		687
(0.8)
P 		803.8
(3)
P 		322
B 396.5
(-3)
P 		435.4
(-2.5)
P 		509
(-1.6)
P 		550.6
(-1.1)
P 		622.8
(-0.2)
P 		889.2
(3)
P 		493
C 386.7
(-3)
P 		403.9
(-2.8)
P 		652.7
(-0.5)
P 		562.2
(-1.3)
P 		610
(-0.9)
P 		1021.6
(3)
P 		635
avr 421.6
(-3) 		445.1
(-2.7) 		583.6
(-1) 		577.3
(-1.1) 		639.9
(-0.3) 		904.9
(3) 		483
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 206
1 2 3 4 range
A 221.2
(3)
P 		112.2
(-0.7)
P 		117.9
(-0.5)
P 		44.8
(-3)
P 		176
B 192.4
(3)
P 		129
(-0.3)
P 		87.3
(-2.5)
P 		77.7
(-3)
P 		115
C 250.6
(3)
P 		112.1
(-2)
P 		160.4
(-0.2)
P 		82.8
(-3)
P 		168
avr 221.4
(3) 		117.8
(-1.1) 		121.9
(-0.9) 		68.4
(-3) 		153

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 253
1 2 3 4 5 6 range
A 88.8
(-3)
P 		176.4
(1.4)
P 		128.3
(-1)
P 		157
(0.5)
P 		207.3
(3)
P 		195.7
(2.4)
P 		119
B 138
(-2.6)
P 		144.9
(-2.4)
P 		123.6
(-3)
P 		145.8
(-2.4)
P 		253
(0.7)
P 		331.6
(3)
P 		208
C 143.3
(-2.2)
P 		123.2
(-2.7)
P 		166.1
(-1.6)
P 		113.1
(-3)
P 		197.4
(-0.8)
P 		342
(3)
P 		229
avr 123.4
(-3) 		148.2
(-2.1) 		139.3
(-2.4) 		138.6
(-2.5) 		219.2
(0.5) 		289.8
(3) 		166
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173957_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25246
Sequence Type Exemplar sequence
Representative Public ID CEXT00191 NCBI
Target Description CEXT00191 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=B0024.10 /5_PRIME_EXT_DB=WormBase Gene ID /GB=M79654 /WB_GENE_ID=B0024.10 /WP=CE05154 /CHR=5 /FEA=Genomic Cluster /DEF=wEST00191 Mixed stage, Stratagene (cat. no. 937006) Caenorhabditis elegans cDNA clone CEMSB95, mRNA sequence.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073251(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073251 NCBI Caenorhabditis elegans B0024.10 (B0024.10) mRNA, complete cds. 11/11 None
SNAP00000027136 ENSEMBL cdna:SNAP chromosome:CEL140:V:10317943:10319911:-1 11/11 None
GENEFINDER00000027142 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10317943:10319974:-1 11/11 None
B0024.10.1 ENSEMBL cdna:known chromosome:CEL140:V:10317833:10319974:-1 gene:B0024.10 11/11 None
B0024.10.2 ENSEMBL cdna:known chromosome:CEL140:V:10317896:10319976:-1 gene:B0024.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10317897-10319912(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0024.10
Entrez Gene 179435 Entrez gene
SwissProt Q17425 EMBL-EBI
WormBase CE05154 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94882 Hypothetical protein B0024.10 [Caenorhabditis elegans] ref|NP_505652.1| B0024.10 [Caenorhabditis elegans] 0.0
blast CAE64789 Hypothetical protein CBG09582 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:173957_S_AT
gaagcctacaaacacactgtcattcgtatatcgattggagaacacattcttcaagtgtac
tttaatactgccgaacaaagctcaaatcttgacttgtttttgaataacgttttgactaga
tctggatggaaactcatgttcactaatctgaaagtggtcacaaacgaattgaaaaacttt
gtcgacatcgaactcgcgccgaaatccactttgatcgccagtttcggaggacaaacagtg
aatgcagcagatgtcgtacacaatgtgatcgaggttactccagaaaaggcagatgcgatg
tcagcggactggctctcgctgaacaaaacttttatgccattcaactcaaccgtcaatgat
gaccgtaaacagaagagacctcaatttcaatcatcttcgtcttcatcgcattcgggacct
cctgccaaatccgctatgccaaaatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGCCTACAAACACACTGTCATTC 379 345 1205 Antisense
GGATGGAAACTCATGTTCACTAATC 543 513 1328 Antisense
AACTTTGTCGACATCGAACTCGCGC 459 139 1379 Antisense
TCGCGCCGAAATCCACTTTGATCGC 353 599 1398 Antisense
CTTTGATCGCCAGTTTCGGAGGACA 154 223 1413 Antisense
TGAATGCAGCAGATGTCGTACACAA 350 575 1443 Antisense
ACACAATGTGATCGAGGTTACTCCA 662 107 1462 Antisense
AGATGCGATGTCAGCGGACTGGCTC 338 67 1495 Antisense
ACTGGCTCTCGCTGAACAAAACTTT 113 97 1512 Antisense
TTATGCCATTCAACTCAACCGTCAA 22 681 1536 Antisense
CTGCCAAATCCGCTATGCCAAAATG 260 237 1626 Antisense
Sequence Source Affymetrix Proprietary Database