[Home] | [Total List]

[173949_s_at]

Description AV194406 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F37D6.2 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV194406 /WB_GENE_ID=F37D6.2 /WP=CE05819 /CHR=1 /FEA=Genomic Cluster /DEF=Zinc finger, C2H2 type (2 domains); Caenorhabditis elegans cDNA clone:yk629b1 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 84      6grp_high1_10_10 > 57      4grp_highest_8_8 > 60      4grp_high_8_8 > 25      6grp_highest_nonorm > 83      6grp_total > 59      4grp_total > 38      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 299
1 2 3 4 range
A 485.1
(3)
P 		350.9
(-1.4)
P 		302.7
(-3)
P 		340.2
(-1.8)
P 		182
B 476
(3)
P 		321.3
(-1.8)
P 		280.8
(-3)
P 		343.5
(-1.1)
P 		195
C 580.2
(3)
P 		338.7
(-2.3)
P 		306.9
(-3)
P 		455
(0.3)
P 		273
avr 513.8
(3) 		337
(-1.9) 		296.8
(-3) 		379.6
(-0.7) 		217

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 259
1 2 3 4 5 6 range
A 490.1
(1)
P 		455
(0.1)
P 		336.2
(-3)
P 		342.2
(-2.8)
P 		390.4
(-1.6)
P 		566.3
(3)
P 		230
B 463.5
(-0.4)
P 		360.9
(-3)
P 		429.3
(-1.2)
P 		392.8
(-2.2)
P 		411.7
(-1.7)
P 		595.1
(3)
P 		234
C 519.2
(1.5)
P 		394.6
(-1.8)
P 		346.3
(-3)
P 		356.9
(-2.7)
P 		372.3
(-2.3)
P 		579.2
(3)
P 		233
avr 490.9
(0.5) 		403.5
(-1.9) 		370.6
(-2.8) 		364
(-3) 		391.5
(-2.2) 		580.2
(3) 		216
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 142
1 2 3 4 range
A 176.6
(3)
P 		76.2
(-1.8)
P 		79.1
(-1.6)
P 		49.8
(-3)
P 		127
B 151.8
(3)
P 		79.4
(-2)
P 		65.1
(-3)
P 		73.2
(-2.4)
P 		87
C 192.1
(3)
P 		97.4
(-1.9)
P 		107
(-1.4)
P 		76.7
(-3)
P 		115
avr 173.5
(3) 		84.3
(-2) 		83.7
(-2) 		66.6
(-3) 		107

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 150
1 2 3 4 5 6 range
A 90.3
(-1.8)
P 		161.8
(3)
P 		73.2
(-3)
P 		86.8
(-2.1)
P 		117.8
(0)
P 		137.9
(1.4)
P 		89
B 161.3
(-0.1)
P 		120.1
(-2.2)
P 		104.3
(-3)
P 		104
(-3)
P 		167.3
(0.2)
P 		221.9
(3)
P 		118
C 192.4
(2.9)
P 		120.4
(-0.6)
P 		88.1
(-2.2)
P 		71.8
(-3)
P 		120.5
(-0.6)
P 		193.9
(3)
P 		122
avr 148
(0.7) 		134.1
(-0.1) 		88.5
(-2.9) 		87.5
(-3) 		135.2
(-0.1) 		184.6
(3) 		97
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173949_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.23101
Sequence Type Exemplar sequence
Representative Public ID AV194406 NCBI
Target Description AV194406 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F37D6.2 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV194406 /WB_GENE_ID=F37D6.2 /WP=CE05819 /CHR=1 /FEA=Genomic Cluster /DEF=Zinc finger, C2H2 type (2 domains); Caenorhabditis elegans cDNA clone:yk629b1 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060340(11), NM_060341(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060340 NCBI Caenorhabditis elegans F37D6.2a (F37D6.2) mRNA, complete cds. 11/11 None
NM_060341 NCBI Caenorhabditis elegans F37D6.2b (F37D6.2) mRNA, complete cds. 11/11 None
SNAP00000007524 ENSEMBL cdna:SNAP chromosome:CEL140:I:10483796:10486218:-1 11/11 None
GENEFINDER00000007530 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10483904:10486218:-1 11/11 None
F37D6.2a.1 ENSEMBL cdna:known chromosome:CEL140:I:10483645:10486252:-1 gene:F37D6.2 11/11 None
F37D6.2a.2 ENSEMBL cdna:known chromosome:CEL140:I:10483796:10486241:-1 gene:F37D6.2 11/11 None
F37D6.2b ENSEMBL cdna:known chromosome:CEL140:I:10483796:10486252:-1 gene:F37D6.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10483727-10486150(-) 100.0 100.0
Public Domain and Genome References
Ensembl F37D6.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA99848 Hypothetical protein F37D6.2a [Caenorhabditis elegans] ref|NP_492741.1| F37D6.2a [Caenorhabditis elegans] 0.0
blast CAD01084 Hypothetical protein F37D6.2b [Caenorhabditis elegans] ref|NP_492742.1| F37D6.2b [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:173949_S_AT
atgtgctctgacattcactagcagattattgcttgaggctcatcgtaccaatgatcacac
aatgctcaattcactgtggcaagtgattgaacggaaatccgtccatgaaactgaaagaga
gcatatgtcaaaaagaaataagataggcctacttcaacgtagattctttgaaactctgga
agggcgtcggataaacgatgaagttgcctgtgctggagacaaagaacgagaaggatttga
tctgacgactactggggatactctgttcgaatgtgaatgtggcttcaagtcgtggaatgg
gaaccgaacagcatcacattatcacaaatgtcgtcggtctataaaggatatcgaaagaaa
acgggaaattgtccggctgggaagtgatccgaaagaagaactcgaacttttcgctgtata
tccacaaccaacaaacactgaagcagaaactgaggaagcaacacttcgaaaaattcattt
ggagagaggagatcctttaccaattcttga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTGCTCTGACATTCACTAGCAGA 653 49 1132 Antisense
ATTGCTTGAGGCTCATCGTACCAAT 154 7 1159 Antisense
TCGTACCAATGATCACACAATGCTC 48 605 1174 Antisense
GATAGGCCTACTTCAACGTAGATTC 664 425 1273 Antisense
GAAACTCTGGAAGGGCGTCGGATAA 318 357 1301 Antisense
GATGAAGTTGCCTGTGCTGGAGACA 362 411 1328 Antisense
GGATTTGATCTGACGACTACTGGGG 665 509 1364 Antisense
GACTACTGGGGATACTCTGTTCGAA 686 371 1378 Antisense
GAACCGAACAGCATCACATTATCAC 343 347 1432 Antisense
TCGAACTTTTCGCTGTATATCCACA 293 601 1533 Antisense
GAGGAGATCCTTTACCAATTCTTGA 552 403 1617 Antisense
Sequence Source Affymetrix Proprietary Database