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[173948_s_at]

Description AF071382 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F35E12.7 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AF071382 /WB_GENE_ID=F35E12.7 /WP=CE09922 /CHR=5 /FEA=Genomic Cluster /DEF=AF071382 mRNA from cadmium-responsive gene Caenorhabditis elegans cDNA clone DDRT3, mRNA sequence.
Cluster 6grp_total > 54      4grp_total > 51      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 122
1 2 3 4 range
A 120.6
(1.3)
P 		110.8
(0.4)
P 		138
(3)
P 		75.7
(-3)
A 		62
B 99.2
(-0.7)
P 		175.3
(3)
P 		99
(-0.7)
P 		53.1
(-3)
A 		122
C 110.5
(-3)
P 		126.5
(0.6)
P 		124.8
(0.2)
P 		136.9
(3)
A 		26
avr 110.1
(-0.4) 		137.5
(3) 		120.6
(0.9) 		88.6
(-3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 100
1 2 3 4 5 6 range
A 43.3
(-3)
A 		53.3
(-1.9)
A 		92.1
(2.4)
A 		64.1
(-0.7)
A 		46.6
(-2.6)
A 		97.3
(3)
A 		54
B 123.1
(3)
P 		23.3
(-3)
A 		89.5
(1)
A 		93.5
(1.2)
A 		26.5
(-2.8)
A 		64.6
(-0.5)
P 		100
C 42.1
(-2.4)
A 		96
(1.4)
A 		118.2
(3)
A 		34.1
(-3)
A 		39.3
(-2.6)
A 		61
(-1.1)
P 		84
avr 69.5
(0.1) 		57.5
(-1.1) 		99.9
(3) 		63.9
(-0.5) 		37.5
(-3) 		74.3
(0.5) 		62
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 43.9
(3)
P 		24.1
(-0.6)
P 		36.1
(1.6)
P 		11.1
(-3)
A 		33
B 31.6
(0.8)
P 		43.3
(3)
P 		22.9
(-0.8)
P 		11.3
(-3)
A 		32
C 36.6
(1)
P 		36.4
(0.9)
P 		43.5
(3)
P 		23.1
(-3)
A 		20
avr 37.4
(3) 		34.6
(2.2) 		34.2
(2.1) 		15.2
(-3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 8
(-3)
A 		19
(1.2)
A 		20.1
(1.6)
A 		16.3
(0.2)
A 		14.1
(-0.7)
A 		23.7
(3)
A 		16
B 42.8
(3)
P 		7.7
(-3)
A 		21.7
(-0.6)
A 		24.8
(-0.1)
A 		10.8
(-2.5)
A 		24.1
(-0.2)
P 		35
C 15.6
(-0.8)
A 		29.3
(2.8)
A 		30.1
(3)
A 		6.9
(-3)
A 		12.7
(-1.5)
A 		20.4
(0.5)
P 		23
avr 22.1
(2) 		18.7
(0.2) 		24
(3) 		16
(-1.2) 		12.5
(-3) 		22.7
(2.3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173948_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25434
Sequence Type Exemplar sequence
Representative Public ID AF071382 NCBI
Target Description AF071382 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F35E12.7 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AF071382 /WB_GENE_ID=F35E12.7 /WP=CE09922 /CHR=5 /FEA=Genomic Cluster /DEF=AF071382 mRNA from cadmium-responsive gene Caenorhabditis elegans cDNA clone DDRT3, mRNA sequence.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028706(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028706 NCBI Caenorhabditis elegans F35E12.7a (F35E12.7) mRNA, complete cds. 11/11 None
SNAP00000032229 ENSEMBL cdna:SNAP chromosome:CEL140:V:13730403:13733363:-1 11/11 None
GENEFINDER00000032243 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13729622:13738741:-1 10/11 None
F35E12.7 ENSEMBL cdna:known chromosome:CEL140:V:13730355:13733366:-1 gene:F35E12.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001028709 1/11 Cross Hyb Matching Probes None
NM_001028708 1/11 Cross Hyb Matching Probes None
NM_001028707 1/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
179865 4 1 NM_001028706 173948_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13730364-13733364(-) 99.03 100.0
Public Domain and Genome References
Ensembl F35E12.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04275 Hypothetical protein F35E12.7a [Caenorhabditis elegans] ref|NP_001023877.1| F35E12.7a [Caenorhabditis elegans] 0.0
blast CAI91171 Hypothetical protein F35E12.7c [Caenorhabditis elegans] ref|NP_001023879.1| F35E12.7c [Caenorhabditis elegans] 0.0
blast CAI91172 Hypothetical protein F35E12.7d [Caenorhabditis elegans] ref|NP_001023880.1| F35E12.7d [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 2.6E-26
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 1.7E-9
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 3.6E-26
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 6.9E-11
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 2.6E-26
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 1.7E-9
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000032243 1 1407-1429
Sequence
Target Sequence 
>C. ELEGANS:173948_S_AT
ggcacaggctagttcaactgcatccaccaccccaatccccataacaacacaaaatatttc
cactgcctctatcgcaacaccttctacaaaaaccccaatcactccttctctcataactac
aagatcttccacaacaaaactatcaccaattgtcatcacaaaatctagtcttgcctacac
agctacacctacttccgcagcgccgtctacttcagctttaacaattaccactcatacaac
cccaattcccggtgtcttaacttctaaaactacctcgaaaactgttgatctcacaactgc
aactcaatcggttcaaactcctatatctaccgacccaattctacaccacacaacaccttc
ttccttcacaattggcactacccaatttttcacagaaatcagcactgttaatccaaaacg
tttgacgggctccaccgcaacaagtgttcacgtggaaacaacaacgaaaggaacatcatc
tctattctctgctggttttctaatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCACAGGCTAGTTCAACTGCATCC 322 535 1702 Antisense
CACAAAATATTTCCACTGCCTCTAT 267 195 1749 Antisense
TCTATCGCAACACCTTCTACAAAAA 310 613 1769 Antisense
CACTCCTTCTCTCATAACTACAAGA 665 197 1801 Antisense
AAAATCTAGTCTTGCCTACACAGCT 432 133 1861 Antisense
GCCGTCTACTTCAGCTTTAACAATT 510 283 1903 Antisense
TTAACAATTACCACTCATACAACCC 140 683 1919 Antisense
ATCTCACAACTGCAACTCAATCGGT 158 33 1989 Antisense
GTTCAAACTCCTATATCTACCGACC 330 443 2012 Antisense
TTCTTCCTTCACAATTGGCACTACC 334 677 2059 Antisense
TCTATTCTCTGCTGGTTTTCTAATC 322 615 2182 Antisense
Sequence Source Affymetrix Proprietary Database