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[173947_at] Phospholipase ADRAB-B (Rabbit)

Description AU115532_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F13H8.5 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AU115532 /WB_GENE_ID=F13H8.5 /WP=CE27128 /CHR=2 /FEA=Genomic Cluster /DEF=Phospholipase ADRAB-B (Rabbit); Caenorhabditis elegans cDNA clone:yk733g12 : 3prime end, single read.
Cluster 6grp_total > 93      4grp_total > 48      6grp_cgc > 98      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 549
1 2 3 4 range
A 21.3
(-3)
A 		488.5
(3)
P 		490.9
(3)
P 		83.2
(-2.2)
A 		470
B 14.4
(-2.9)
A 		284.1
(0.8)
P 		441.7
(3)
P 		5
(-3)
A 		437
C 26.1
(-3)
A 		339.4
(0.6)
P 		554
(3)
P 		45.5
(-2.8)
A 		528
avr 20.6
(-3) 		370.7
(1.4) 		495.5
(3) 		44.6
(-2.7) 		475

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 238
1 2 3 4 5 6 range
A 63.4
(-2.7)
A 		178.7
(1.4)
P 		84.2
(-1.9)
P 		103.2
(-1.3)
P 		223.7
(3)
P 		53.7
(-3)
A 		170
B 19.9
(-3)
A 		187
(1.2)
P 		92.8
(-1.2)
P 		86.5
(-1.3)
P 		257.9
(3)
P 		44
(-2.4)
A 		238
C 30.2
(-3)
A 		151.3
(0.6)
P 		95.8
(-1.1)
P 		104.8
(-0.8)
P 		233.4
(3)
P 		62.3
(-2.1)
A 		203
avr 37.8
(-3) 		172.3
(1) 		90.9
(-1.4) 		98.2
(-1.2) 		238.3
(3) 		53.3
(-2.5) 		201
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 192
1 2 3 4 range
A 7.7
(-3)
A 		106
(1.9)
P 		128.3
(3)
P 		12.2
(-2.8)
A 		121
B 4.6
(-2.8)
A 		70.2
(1.1)
P 		102.4
(3)
P 		1.1
(-3)
A 		101
C 8.6
(-3)
A 		97.6
(-0.1)
P 		193.1
(3)
P 		7.7
(-3)
A 		185
avr 7
(-3) 		91.3
(0.8) 		141.3
(3) 		7
(-3) 		134

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 98
1 2 3 4 5 6 range
A 11.7
(-3)
A 		63.6
(2.6)
P 		18.3
(-2.3)
P 		26.2
(-1.4)
P 		67.5
(3)
P 		13.1
(-2.8)
A 		56
B 6.9
(-3)
A 		62.2
(0.4)
P 		22.5
(-2)
P 		22.9
(-2)
P 		104.8
(3)
P 		16.4
(-2.4)
A 		98
C 11.2
(-3)
A 		46.2
(0.3)
P 		24.4
(-1.8)
P 		21.1
(-2.1)
P 		75.5
(3)
P 		20.9
(-2.1)
A 		64
avr 9.9
(-3) 		57.3
(0.9) 		21.7
(-2) 		23.4
(-1.9) 		82.6
(3) 		16.8
(-2.4) 		73
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173947_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.23772
Sequence Type Exemplar sequence
Representative Public ID AU115532 NCBI
Target Description AU115532_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F13H8.5 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AU115532 /WB_GENE_ID=F13H8.5 /WP=CE27128 /CHR=2 /FEA=Genomic Cluster /DEF=Phospholipase ADRAB-B (Rabbit); Caenorhabditis elegans cDNA clone:yk733g12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062850(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062850 NCBI Caenorhabditis elegans F13H8.5 (F13H8.5) mRNA, complete cds. 11/11 None
F13H8.5 ENSEMBL cdna:known chromosome:CEL140:II:6252723:6256022:-1 gene:F13H8.5 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6252734-6259901(-) 90.16 100.0
Public Domain and Genome References
Gene Title Phospholipase ADRAB-B (Rabbit)
Ensembl F13H8.5
Entrez Gene 174035 Entrez gene
SwissProt Q19429 EMBL-EBI
WormBase CE36821 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK31493 Hypothetical protein F13H8.5 [Caenorhabditis elegans] ref|NP_495251.2| F13H8.5 [Caenorhabditis elegans] 1.0E-144
blast CAE59274 Hypothetical protein CBG02606 [Caenorhabditis briggsae] 1.0E-131
blast T16060 hypothetical protein F13H8.5 - Caenorhabditis elegans 4.0E-73
Protein Domains
Database ID Description E-Value
Pfam IPR002602 EMBL-EBI Protein of unknown function DB 7.6E-57
Sequence
Target Sequence 
>C. ELEGANS:173947_AT
cttgctgccctttaatactaatacaattgaaactgagctctcttcaaaatgccaaccccc
acttcaatctagtccttgccatgttaaattattactccgccttccaatttatcttttttc
taattgaaccggtgttgtacaattttttggttatcagattggtttcatttgaattggact
tgatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTGCTGCCCTTTAATACTAATACA 51 219 2945 Antisense
GCTGCCCTTTAATACTAATACAATT 49 297 2948 Antisense
AATACAATTGAAACTGAGCTCTCTT 635 171 2964 Antisense
CTGAGCTCTCTTCAAAATGCCAACC 108 239 2977 Antisense
CTTCAATCTAGTCCTTGCCATGTTA 372 221 3006 Antisense
AATCTAGTCCTTGCCATGTTAAATT 395 167 3010 Antisense
CATGTTAAATTATTACTCCGCCTTC 195 209 3024 Antisense
TATCTTTTTTCTAATTGAACCGGTG 462 659 3054 Antisense
TGAACCGGTGTTGTACAATTTTTTG 223 555 3069 Antisense
TTGGTTATCAGATTGGTTTCATTTG 39 709 3091 Antisense
GGTTTCATTTGAATTGGACTTGATT 493 505 3105 Antisense
Sequence Source Affymetrix Proprietary Database