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[173945_s_at] Neutrophil oxidase factor

Description AV184264_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=B0303.7 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV184264 /WB_GENE_ID=B0303.7 /WP=CE00538 /CHR=3 /FEA=Genomic Cluster /DEF=Neutrophil oxidase factor; Caenorhabditis elegans cDNA clone:yk662b6 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 73      6grp_high1_10_10 > 37      4grp_highest_8_8 > 46      4grp_high_8_8 > 02      6grp_highest_nonorm > 51      6grp_total > 07      4grp_total > 14      6grp_highest_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 636
1 2 3 4 range
A 840.1
(1.2)
P 		415.3
(-3)
P 		411.6
(-3)
P 		1029.2
(3)
P 		618
B 853.1
(3)
P 		408.3
(-3)
P 		440
(-2.6)
P 		728.6
(1.3)
P 		445
C 839.9
(2)
P 		393.5
(-3)
P 		429.6
(-2.6)
P 		925.3
(3)
P 		532
avr 844.4
(2.4) 		405.7
(-3) 		427.1
(-2.7) 		894.4
(3) 		489

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 483
1 2 3 4 5 6 range
A 810.3
(3)
P 		564.8
(-0.2)
P 		622.8
(0.6)
P 		510
(-0.9)
P 		346.9
(-3)
P 		540.8
(-0.5)
P 		463
B 829.4
(3)
P 		557.6
(-0.7)
P 		620.7
(0.2)
P 		494.3
(-1.6)
P 		388.1
(-3)
P 		560.1
(-0.7)
P 		441
C 676.1
(3)
P 		645.4
(2.4)
P 		590.6
(1.4)
P 		475.7
(-0.7)
P 		346.9
(-3)
P 		504.1
(-0.1)
P 		329
avr 771.9
(3) 		589.3
(0.3) 		611.4
(0.7) 		493.3
(-1.1) 		360.6
(-3) 		535
(-0.5) 		411
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 216
1 2 3 4 range
A 305.9
(3)
P 		90.1
(-3)
P 		107.6
(-2.5)
P 		150.7
(-1.3)
P 		216
B 272.1
(3)
P 		100.8
(-3)
P 		102
(-3)
P 		155.3
(-1.1)
P 		171
C 278
(3)
P 		113.1
(-3)
P 		149.7
(-1.7)
P 		156
(-1.4)
P 		165
avr 285.3
(3) 		101.3
(-3) 		119.8
(-2.4) 		154
(-1.3) 		184

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 193
1 2 3 4 5 6 range
A 149.4
(-0.2)
P 		200.9
(3)
P 		135.6
(-1.1)
P 		129.3
(-1.5)
P 		104.7
(-3)
P 		131.7
(-1.3)
P 		96
B 288.6
(3)
P 		185.6
(-0.9)
P 		150.7
(-2.2)
P 		130.9
(-3)
P 		157.7
(-2)
P 		208.9
(-0)
P 		158
C 250.6
(3)
P 		196.9
(0.9)
P 		150.3
(-0.9)
P 		95.7
(-3)
P 		112.3
(-2.4)
P 		168.8
(-0.2)
P 		155
avr 229.5
(3) 		194.5
(1.1) 		145.5
(-1.5) 		118.6
(-3) 		124.9
(-2.7) 		169.8
(-0.2) 		111
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173945_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.24316
Sequence Type Exemplar sequence
Representative Public ID AV184264 NCBI
Target Description AV184264_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=B0303.7 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV184264 /WB_GENE_ID=B0303.7 /WP=CE00538 /CHR=3 /FEA=Genomic Cluster /DEF=Neutrophil oxidase factor; Caenorhabditis elegans cDNA clone:yk662b6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066517(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066517 NCBI Caenorhabditis elegans B0303.7 (B0303.7) mRNA, complete cds. 11/11 None
SNAP00000042406 ENSEMBL cdna:SNAP chromosome:CEL140:III:8696955:8699098:1 11/11 None
GENEFINDER00000042415 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8697100:8699098:1 11/11 None
B0303.7 ENSEMBL cdna:known chromosome:CEL140:III:8693540:8699357:1 gene:B0303.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8696950-8699094(+) 100.0 100.0
Public Domain and Genome References
Gene Title Neutrophil oxidase factor
Ensembl B0303.7
Entrez Gene 176220 Entrez gene
SwissProt P34258 EMBL-EBI
WormBase CE36521 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.12834.1.S1_AT similar to SH3 domain protein D19 cfa
CANINE_2:CFAAFFX.12840.1.S1_S_AT similar to SH3 domain protein D19 cfa
CANINE_2:CFAAFFX.12845.1.S1_AT similar to SH3 domain protein D19 cfa
CHICKEN:GGA.14699.1.S1_AT SH3 domain protein D19 gga
CHICKEN:GGAAFFX.6334.1.S1_AT SH3 domain protein D19 gga
CHICKEN:GGAAFFX.6334.2.S1_AT SH3 domain protein D19 gga
CHICKEN:GGAAFFX.6334.2.S1_S_AT SH3 domain protein D19 gga
HU35KSUBA:RC_AA054561_AT SH3 domain protein D19 hs
HU35KSUBC:RC_AA446651_AT SH3 domain protein D19 hs
U133_X3P:HS2.421527.1.S1_3P_AT SH3 domain protein D19 hs
U133_X3P:HS.24715.0.S1_3P_AT SH3 domain protein D19 hs
HG-U133_PLUS_2:1558647_AT SH3 domain protein D19 hs
HG-U133_PLUS_2:225162_AT SH3 domain protein D19 hs
HG-U133B:225162_AT SH3 domain protein D19 hs
HG-U95B:50385_AT SH3 domain protein D19 hs
HG-U95D:82211_AT SH3 domain protein D19 hs
HG-U133_PLUS_2:234124_AT SH3 domain protein D19 hs
HG-U133B:234124_AT SH3 domain protein D19 hs
HG-U133_PLUS_2:236010_AT SH3 domain protein D19 hs
HG-U133B:236010_AT SH3 domain protein D19 hs
HG-U133_PLUS_2:237157_AT SH3 domain protein D19 hs
HG-U133B:237157_AT SH3 domain protein D19 hs
HG-U133_PLUS_2:237440_AT SH3 domain protein D19 hs
HG-U133B:237440_AT SH3 domain protein D19 hs
HG-U133_PLUS_2:243636_S_AT SH3 domain protein D19 hs
HG-U133B:243636_S_AT SH3 domain protein D19 hs
HG-U95B:46495_AT SH3 domain protein D19 hs
HG-U95C:49335_AT SH3 domain protein D19 hs
HG-U95C:54309_AT SH3 domain protein D19 hs
HG-U95C:61424_AT SH3 domain protein D19 hs
HG-U95E:70754_AT SH3 domain protein D19 hs
HG-U95D:78309_AT SH3 domain protein D19 hs
U133_X3P:HS.132917.0.A1_3P_AT SH3 domain protein D19 hs
U133_X3P:HS.209260.0.A1_3P_AT SH3 domain protein D19 hs
HU35KSUBB:RC_T97627_AT SH3 domain protein D19 hs
HU35KSUBC:RC_N39590_AT SH3 domain protein D19 hs
U133_X3P:HS.110334.0.A1_3P_AT SH3 domain protein D19 hs
U133_X3P:HS.82415.0.A1_3P_AT SH3 domain protein D19 hs
MOUSE430_2:1427574_S_AT SH3 domain protein D19 mm
MOUSE430A_2:1427574_S_AT SH3 domain protein D19 mm
MOE430A:1427574_S_AT SH3 domain protein D19 mm
MU11KSUBA:D89677_S_AT SH3 domain protein D19 mm
MG-U74AV2:103755_AT SH3 domain protein D19 mm
MG-U74BV2:110591_AT SH3 domain protein D19 mm
MOE430A:1418460_AT SH3 domain protein D19 mm
MOUSE430A_2:1418460_AT SH3 domain protein D19 mm
MOUSE430_2:1418460_AT SH3 domain protein D19 mm
MOE430A:1418461_AT SH3 domain protein D19 mm
MOUSE430A_2:1418461_AT SH3 domain protein D19 mm
MOUSE430_2:1418461_AT SH3 domain protein D19 mm
MOE430A:1449084_S_AT SH3 domain protein D19 mm
MOUSE430A_2:1449084_S_AT SH3 domain protein D19 mm
MOUSE430_2:1449084_S_AT SH3 domain protein D19 mm
MOUSE430_2:1445781_AT SH3 domain protein D19, mRNA (cDNA clone MGC:35968 IMAGE:5064197) mm
MOE430B:1445781_AT SH3 domain protein D19, mRNA (cDNA clone MGC:35968 IMAGE:5064197) mm
RAE230A:1390387_AT Similar to SH3 domain protein D19 (predicted) rn
RAT230_2:1390387_AT Similar to SH3 domain protein D19 (predicted) rn
RG-U34B:RC_AA945998_AT Similar to SH3 domain protein D19 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast AAA27900 Hypothetical protein B0303.7 [Caenorhabditis elegans] ref|NP_498918.3| B0303.7 [Caenorhabditis elegans] sp|P34258|YKA7_CAEEL Hypothetical protein B0303.7 in chromosome III 0.0
blast CAE62727 Hypothetical protein CBG06887 [Caenorhabditis briggsae] 0.0
blast S27797 hypothetical protein 6 (cosmid B0303) - Caenorhabditis elegans (fragment) 9.0E-54
blast S27797 hypothetical protein 6 (cosmid B0303) - Caenorhabditis elegans (fragment) 1.0E-53
Protein Domains
Database ID Description E-Value
Pfam IPR001452 EMBL-EBI SH3 1.3E-18
Pfam IPR001452 EMBL-EBI SH3 5.6E-17
Pfam IPR001452 EMBL-EBI SH3 2.0E-10
Pfam IPR001452 EMBL-EBI SH3 1.3E-18
Pfam IPR001452 EMBL-EBI SH3 5.6E-17
Pfam IPR001452 EMBL-EBI SH3 2.0E-10
Pfam IPR001452 EMBL-EBI SH3 1.3E-18
Pfam IPR001452 EMBL-EBI SH3 5.6E-17
Pfam IPR001452 EMBL-EBI SH3 2.0E-10
Sequence
Target Sequence 
>C. ELEGANS:173945_S_AT
caggaatctttccatctcaatttgtggattgtccaaatctttatcaagttccaatgaaac
aatcagctccatcatctgctccatcttattctcatccaattacaaacaatagtggtccca
aacaaaccgttactgtatcttatgattacgattctggagttgcttctgacctccgattat
tcgaaggtgacgtcatcacagccctggaagacattgatgctcaatggttgctcgcagaat
gtcgtggacaacagggaatggttccgaagaccttcttgggaccaccatacggatctccaa
agaaggcaccgtcaaaaggaatcgctgaaattgcatgtgcattctctccgaagaaggcag
ttgccactggtgactatcattccgaagatcccaaacatctttatgtgacacgtggcgatc
atttattgattgtggaagatgttgatgactactattacaagggaaaattggaagctttca
agactttgccagcgggtattctgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGGAATCTTTCCATCTCAATTTGT 323 209 883 Antisense
AAACAATCAGCTCCATCATCTGCTC 587 129 939 Antisense
TCTGGAGTTGCTTCTGACCTCCGAT 446 607 1035 Antisense
ACGTCATCACAGCCCTGGAAGACAT 662 93 1072 Antisense
GATGCTCAATGGTTGCTCGCAGAAT 463 413 1098 Antisense
GGGAATGGTTCCGAAGACCTTCTTG 369 493 1136 Antisense
TTCTTGGGACCACCATACGGATCTC 406 689 1155 Antisense
GGATCTCCAAAGAAGGCACCGTCAA 168 513 1173 Antisense
AAGGCAGTTGCCACTGGTGACTATC 534 161 1236 Antisense
GGTGACTATCATTCCGAAGATCCCA 81 501 1251 Antisense
AAGACTTTGCCAGCGGGTATTCTGC 501 153 1362 Antisense
Sequence Source Affymetrix Proprietary Database