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[173942_s_at]

Description CE10H5 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F38A5.1 /5_PRIME_EXT_DB=WormBase Gene ID /GB=M88921 /WB_GENE_ID=F38A5.1 /WP=CE10028 /CHR=4 /FEA=Genomic Cluster /DEF=CEL10H5 Chris Martin sorted cDNA library Caenorhabditis elegans cDNA clone cm10h5 5prime, mRNA sequence.
Cluster 6grp_highest_10_10 > 66      6grp_high1_10_10 > 65      4grp_highest_8_8 > 36      4grp_high_8_8 > 0      6grp_highest_nonorm > 85      6grp_total > 56      4grp_total > 07      6grp_highest_sub > Da      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 260
1 2 3 4 range
A 671.2
(2.4)
P 		480.1
(-3)
P 		692.5
(3)
P 		626.8
(1.1)
P 		212
B 645
(3)
P 		432.7
(-3)
P 		529.3
(-0.3)
P 		568.1
(0.8)
P 		212
C 634.3
(1.9)
P 		539.8
(-3)
P 		655.1
(3)
P 		574.4
(-1.2)
P 		115
avr 650.2
(3) 		484.2
(-3) 		625.6
(2.1) 		589.8
(0.8) 		166

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 335
1 2 3 4 5 6 range
A 800.6
(3)
P 		709
(-3)
P 		741.1
(-0.9)
P 		755
(0)
P 		761.8
(0.5)
P 		771
(1.1)
P 		92
B 675.6
(-2.3)
P 		740.4
(-0.5)
P 		798.9
(1.2)
P 		651.6
(-3)
P 		729.7
(-0.8)
P 		862.5
(3)
P 		211
C 750.6
(-0.6)
P 		787.8
(0.1)
P 		862.7
(1.4)
P 		721.3
(-1.1)
P 		616.8
(-3)
P 		952.2
(3)
P 		335
avr 742.3
(-1.5) 		745.7
(-1.4) 		800.9
(0.7) 		709.3
(-2.8) 		702.8
(-3) 		861.9
(3) 		159
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 153
1 2 3 4 range
A 244.4
(3)
P 		104.2
(-2.5)
P 		181
(0.5)
P 		91.7
(-3)
P 		153
B 205.7
(3)
P 		106.9
(-3)
P 		122.6
(-2)
P 		121.1
(-2.1)
P 		99
C 210
(2.2)
P 		155.2
(-0.3)
P 		228.3
(3)
P 		96.8
(-3)
P 		132
avr 220
(3) 		122.1
(-2) 		177.3
(0.8) 		103.2
(-3) 		117

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 177
1 2 3 4 5 6 range
A 147.6
(-3)
P 		252.1
(3)
P 		161.4
(-2.2)
P 		191.5
(-0.5)
P 		229.9
(1.7)
P 		187.7
(-0.7)
P 		105
B 235.1
(-0.5)
P 		246.5
(-0)
P 		194
(-2.1)
P 		172.6
(-3)
P 		296.5
(2)
P 		321.6
(3)
P 		149
C 278.2
(1.6)
P 		240.4
(0.3)
P 		219.6
(-0.4)
P 		145.1
(-3)
P 		199.6
(-1.1)
P 		318.7
(3)
P 		174
avr 220.3
(-0.1) 		246.3
(1.3) 		191.7
(-1.8) 		169.7
(-3) 		242
(1.1) 		276
(3) 		106
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173942_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.24896
Sequence Type Exemplar sequence
Representative Public ID CE10H5 NCBI
Target Description CE10H5 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F38A5.1 /5_PRIME_EXT_DB=WormBase Gene ID /GB=M88921 /WB_GENE_ID=F38A5.1 /WP=CE10028 /CHR=4 /FEA=Genomic Cluster /DEF=CEL10H5 Chris Martin sorted cDNA library Caenorhabditis elegans cDNA clone cm10h5 5prime, mRNA sequence.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028017(11), NM_001028018(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028017 NCBI Caenorhabditis elegans F38A5.1a (F38A5.1) mRNA, complete cds. 11/11 None
NM_001028018 NCBI Caenorhabditis elegans F38A5.1b (F38A5.1) mRNA, complete cds. 11/11 None
SNAP00000010562 ENSEMBL cdna:SNAP chromosome:CEL140:IV:6580024:6582644:-1 11/11 None
GENEFINDER00000010582 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:6580109:6582644:-1 10/11 None
F38A5.1a ENSEMBL cdna:known chromosome:CEL140:IV:6579829:6582660:-1 gene:F38A5.1 11/11 None
F38A5.1b ENSEMBL cdna:known chromosome:CEL140:IV:6580024:6582602:-1 gene:F38A5.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6580030-6582651(-) 100.0 100.0
Public Domain and Genome References
Ensembl F38A5.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB09146 Hypothetical protein F38A5.1a [Caenorhabditis elegans] ref|NP_001023188.1| F38A5.1a [Caenorhabditis elegans] 0.0
blast AAO91721 Hypothetical protein F38A5.1b [Caenorhabditis elegans] ref|NP_001023189.1| F38A5.1b [Caenorhabditis elegans] 0.0
blast CAE61511 Hypothetical protein CBG05410 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:173942_S_AT
cattcgagagccacatttgtctataacaaatgatcaaccagttggtgaaataaccactgt
aaatgggccgtacaattatcatcattacatgcaagatggaattgatgatagtggatgggg
atgtgcatatcgtagtttccaaactatctggagttggttcattttgaatggatatactga
taaacctgtgccaagtcatcgggaaattcagcaggcgcttgttgatattcaagacaagca
agcgaagtttgttggttcacgacagtggattggtagtactgaaatcagttttgtgctcaa
tgagctactcgagttagaatgccgtttcatcgctaccaactcgggcgcagaagttgtcga
aagagttcgtgaacttgctcgacattttgaaacatctggaactcctgttatgatcggagg
aaatatgcttgcacatactattcttggagtcgatttcaatgataccactggagagactag
attcctcgttcttgatcctcattacactggctccgaagatatcaaaacaatcacttcaaa
aggatggtgtgcatggaaaccagcgagcttctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATTCGAGAGCCACATTTGTCTATA 343 217 1153 Antisense
GGGCCGTACAATTATCATCATTACA 677 491 1217 Antisense
GATAAACCTGTGCCAAGTCATCGGG 343 423 1331 Antisense
GTCATCGGGAAATTCAGCAGGCGCT 368 467 1347 Antisense
GTTAGAATGCCGTTTCATCGCTACC 471 445 1465 Antisense
GAGTTCGTGAACTTGCTCGACATTT 489 397 1515 Antisense
GAAACATCTGGAACTCCTGTTATGA 692 355 1541 Antisense
ATGCTTGCACATACTATTCTTGGAG 181 43 1577 Antisense
TCGTTCTTGATCCTCATTACACTGG 423 603 1638 Antisense
TCCTCATTACACTGGCTCCGAAGAT 95 593 1648 Antisense
GTGCATGGAAACCAGCGAGCTTCTG 203 479 1701 Antisense
Sequence Source Affymetrix Proprietary Database