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[173941_at]

Description CE18H7 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=D2092.2 /5_PRIME_EXT_DB=WormBase Gene ID /GB=M89233 /WB_GENE_ID=D2092.2 /WP=CE09101 /CHR=1 /FEA=Genomic Cluster /DEF=CEL18H7 Chris Martin sorted cDNA library Caenorhabditis elegans cDNA clone cm18h7 5prime, mRNA sequence.
Cluster 6grp_highest_10_10 > 95      6grp_high1_10_10 > 58      4grp_highest_8_8 > 34      4grp_high_8_8 > 57      6grp_highest_nonorm > 84      6grp_total > 69      4grp_total > 63      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 254
1 2 3 4 range
A 623.6
(3)
P 		394.3
(-3)
P 		621
(2.9)
P 		420
(-2.3)
P 		229
B 623.6
(3)
P 		504.5
(-1.4)
P 		520
(-0.8)
P 		461.6
(-3)
P 		162
C 647.9
(3)
P 		520.9
(-0.5)
P 		623.8
(2.3)
P 		431
(-3)
P 		217
avr 631.7
(3) 		473.2
(-1.9) 		588.3
(1.7) 		437.5
(-3) 		194

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 423
1 2 3 4 5 6 range
A 520.7
(-1.5)
P 		605.1
(0.4)
P 		462.1
(-2.7)
P 		449.4
(-3)
P 		670.1
(1.8)
P 		727.7
(3)
P 		278
B 872.6
(3)
P 		567.9
(-1.8)
P 		582.5
(-1.6)
P 		495.6
(-3)
P 		647.3
(-0.6)
P 		792.2
(1.7)
P 		377
C 567
(-1)
P 		554.1
(-1.2)
P 		542.1
(-1.5)
P 		472
(-3)
P 		566.5
(-1)
P 		751.7
(3)
P 		280
avr 653.4
(0.8) 		575.7
(-0.8) 		528.9
(-1.8) 		472.3
(-3) 		628
(0.3) 		757.2
(3) 		285
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 166
1 2 3 4 range
A 227
(3)
P 		85.6
(-2.1)
P 		162.3
(0.7)
P 		61.5
(-3)
P 		166
B 198.9
(3)
P 		124.6
(-1.4)
P 		120.5
(-1.7)
P 		98.4
(-3)
P 		101
C 214.5
(2.9)
P 		149.8
(0.2)
P 		217.4
(3)
P 		72.7
(-3)
P 		145
avr 213.5
(3) 		120
(-1.1) 		166.7
(0.9) 		77.5
(-3) 		136

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 209
1 2 3 4 5 6 range
A 96
(-3)
P 		215.2
(3)
P 		100.6
(-2.8)
P 		114
(-2.1)
P 		202.2
(2.3)
P 		177.2
(1.1)
P 		119
B 303.6
(3)
P 		189
(-1)
P 		141.5
(-2.6)
P 		131.3
(-3)
P 		263
(1.6)
P 		295.4
(2.7)
P 		172
C 210.2
(1.4)
P 		169.1
(-0.2)
P 		138
(-1.3)
P 		94.9
(-3)
P 		183.3
(0.4)
P 		251.6
(3)
P 		157
avr 203.3
(1.2) 		191.1
(0.6) 		126.7
(-2.4) 		113.4
(-3) 		216.2
(1.8) 		241.4
(3) 		128
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173941_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22586
Sequence Type Exemplar sequence
Representative Public ID CE18H7 NCBI
Target Description CE18H7 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=D2092.2 /5_PRIME_EXT_DB=WormBase Gene ID /GB=M89233 /WB_GENE_ID=D2092.2 /WP=CE09101 /CHR=1 /FEA=Genomic Cluster /DEF=CEL18H7 Chris Martin sorted cDNA library Caenorhabditis elegans cDNA clone cm18h7 5prime, mRNA sequence.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059506(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059506 NCBI Caenorhabditis elegans D2092.2 (D2092.2) mRNA, complete cds. 11/11 None
D2092.2 ENSEMBL cdna:known chromosome:CEL140:I:6633192:6634930:-1 gene:D2092.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6633202-6634844(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl D2092.2
Entrez Gene 172381 Entrez gene
SwissProt P91198 EMBL-EBI
WormBase CE09101 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB42229 Hypothetical protein D2092.2 [Caenorhabditis elegans] ref|NP_491907.1| D2092.2 [Caenorhabditis elegans] 1.0E-171
blast CAE67247 Hypothetical protein CBG12687 [Caenorhabditis briggsae] 1.0E-117
blast XP_783289 PREDICTED: similar to protein phosphatase 4, regulatory subunit 2 [Strongylocentrotus purpuratus] 9.0E-11
Sequence
Target Sequence 
>C. ELEGANS:173941_AT
gaatgatttttggccactataactgaaaaatatttcaagatgtctgatgtttctcagcaa
tttttaactcatttcaaaaatattctccctgtcgagatctctgttttgttctatctttct
ctaaagtccatatgttcttttttatctaggttgtgagcctattcccatttcatatttcag
cagcctccattcaggcccgcttgggcaatgtattatttccatatgaaccacgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATGATTTTTGGCCACTATAACTG 393 331 1145 Antisense
AGATGTCTGATGTTTCTCAGCAATT 610 67 1182 Antisense
CTCAGCAATTTTTAACTCATTTCAA 307 227 1197 Antisense
AATATTCTCCCTGTCGAGATCTCTG 79 175 1223 Antisense
GATCTCTGTTTTGTTCTATCTTTCT 532 419 1240 Antisense
GTTCTATCTTTCTCTAAAGTCCATA 76 443 1252 Antisense
AAGTCCATATGTTCTTTTTTATCTA 27 157 1268 Antisense
TTGTGAGCCTATTCCCATTTCATAT 375 709 1295 Antisense
TTTCATATTTCAGCAGCCTCCATTC 56 673 1312 Antisense
TCCATTCAGGCCCGCTTGGGCAATG 684 585 1330 Antisense
TGTATTATTTCCATATGAACCACGC 370 559 1353 Antisense
Sequence Source Affymetrix Proprietary Database