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[173940_at]

Description CE12F3 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=T14D7.2 /5_PRIME_EXT_DB=WormBase Gene ID /GB=M88978 /WB_GENE_ID=T14D7.2 /WP=CE13644 /CHR=2 /FEA=Genomic Cluster /DEF=CEL12F3 Chris Martin sorted cDNA library Caenorhabditis elegans cDNA clone cm12f3 5prime, mRNA sequence.
Cluster 6grp_highest_10_10 > 89      6grp_high1_10_10 > 98      4grp_highest_8_8 > 14      4grp_high_8_8 > 14      6grp_highest_nonorm > 88      6grp_total > 98      4grp_total > 09      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4018
1 2 3 4 range
A 689.6
(-3)
P 		1472.5
(-1.8)
P 		1366.5
(-2)
P 		4680.1
(3)
P 		3991
B 661.9
(-3)
P 		1290.8
(-2)
P 		1405.7
(-1.8)
P 		4439.1
(3)
P 		3777
C 673.5
(-3)
P 		1173.7
(-2.2)
P 		1559.5
(-1.5)
P 		4324.6
(3)
P 		3651
avr 675
(-3) 		1312.3
(-2) 		1443.9
(-1.8) 		4481.3
(3) 		3806

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1425
1 2 3 4 5 6 range
A 984.4
(-2.6)
P 		950.9
(-2.8)
P 		905
(-3)
P 		1190
(-1.7)
P 		2242.6
(3)
P 		1799.2
(1)
P 		1338
B 925.9
(-3)
P 		1126.9
(-1.9)
P 		1225.5
(-1.4)
P 		1390.2
(-0.5)
P 		1722.2
(1.3)
P 		2026.7
(3)
P 		1101
C 817.8
(-3)
P 		1047.6
(-1.8)
P 		946.2
(-2.3)
P 		1221.5
(-0.9)
P 		1637
(1.3)
P 		1972.3
(3)
P 		1155
avr 909.4
(-3) 		1041.8
(-2.2) 		1025.6
(-2.3) 		1267.2
(-0.9) 		1867.3
(2.6) 		1932.7
(3) 		1023
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 735
1 2 3 4 range
A 251.1
(-3)
P 		319.6
(-2.1)
P 		357.2
(-1.5)
P 		685.1
(3)
P 		434
B 211.1
(-3)
P 		318.8
(-2.1)
P 		325.7
(-2.1)
P 		946
(3)
P 		735
C 222.9
(-3)
P 		337.5
(-1.6)
P 		543.5
(0.8)
P 		729.2
(3)
P 		506
avr 228.4
(-3) 		325.3
(-2) 		408.8
(-1.1) 		786.8
(3) 		558

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 574
1 2 3 4 5 6 range
A 181.5
(-3)
P 		338.2
(-1.1)
P 		197.1
(-2.8)
P 		301.8
(-1.5)
P 		676.7
(3)
P 		438
(0.1)
P 		495
B 322.2
(-2.7)
P 		375.1
(-2)
P 		297.6
(-3)
P 		368.2
(-2.1)
P 		699.7
(2.3)
P 		755.8
(3)
P 		458
C 303.1
(-2.1)
P 		319.6
(-1.9)
P 		240.8
(-3)
P 		245.6
(-2.9)
P 		529.7
(1.1)
P 		660.2
(3)
P 		419
avr 268.9
(-2.6) 		344.3
(-1.5) 		245.2
(-3) 		305.2
(-2.1) 		635.4
(3) 		618
(2.7) 		390
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173940_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.23354
Sequence Type Exemplar sequence
Representative Public ID CE12F3 NCBI
Target Description CE12F3 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=T14D7.2 /5_PRIME_EXT_DB=WormBase Gene ID /GB=M88978 /WB_GENE_ID=T14D7.2 /WP=CE13644 /CHR=2 /FEA=Genomic Cluster /DEF=CEL12F3 Chris Martin sorted cDNA library Caenorhabditis elegans cDNA clone cm12f3 5prime, mRNA sequence.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063485(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063485 NCBI Caenorhabditis elegans T14D7.2 (T14D7.2) mRNA, complete cds. 11/11 None
T14D7.2 ENSEMBL cdna:known chromosome:CEL140:II:8848759:8852183:-1 gene:T14D7.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8848825-8852181(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T14D7.2
Entrez Gene 174415 Entrez gene
SwissProt Q94056 EMBL-EBI
WormBase CE13644 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16747 transferase activity, transferring groups other than amino-acyl groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03365 Hypothetical protein T14D7.2 [Caenorhabditis elegans] ref|NP_495886.1| T14D7.2 [Caenorhabditis elegans] 0.0
blast CAE59751 Hypothetical protein CBG03197 [Caenorhabditis briggsae] 0.0
blast XP_799222 PREDICTED: similar to CG14205-PA [Strongylocentrotus purpuratus] 2.0E-48
Protein Domains
Database ID Description E-Value
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 2.0E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495886.1 10 46-68,298-320,340-362,395-412,448-470,477-499,564-586,608-630,645-667,674-696
T14D7.2 10 46-68,298-320,340-362,395-412,448-470,477-499,564-586,608-630,645-667,674-696
Sequence
Target Sequence 
>C. ELEGANS:173940_AT
attttcatcaggcacgggacatttgaggtaaatagtgggtgatcatttccttgtcaaccc
gaattcattacgagtagtctcattcatttcttaaattgtttcatttcattccgccattca
ctttttcatttgttagctcctctttcatttgctttacatttcttttagattagttgaaat
ttttctgttcttctttcttgatggtctttcagtaattgattattcccccggtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTTCATCAGGCACGGGACATTTG 671 1 2253 Antisense
AGTGGGTGATCATTTCCTTGTCAAC 348 59 2286 Antisense
TCCTTGTCAACCCGAATTCATTACG 503 591 2300 Antisense
ACGAGTAGTCTCATTCATTTCTTAA 304 93 2322 Antisense
AAATTGTTTCATTTCATTCCGCCAT 553 115 2345 Antisense
CCGCCATTCACTTTTTCATTTGTTA 231 263 2363 Antisense
CTTTTTCATTTGTTAGCTCCTCTTT 182 223 2373 Antisense
ATTTGCTTTACATTTCTTTTAGATT 451 17 2399 Antisense
AATTTTTCTGTTCTTCTTTCTTGAT 130 175 2430 Antisense
TGTTCTTCTTTCTTGATGGTCTTTC 198 563 2438 Antisense
TCAGTAATTGATTATTCCCCCGGTC 659 621 2461 Antisense
Sequence Source Affymetrix Proprietary Database