[Home] | [Total List]

[173938_s_at] glutathione S-transferase

Description AV195077 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=Y48E1B.10 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV195077 /WB_GENE_ID=Y48E1B.10 /WP=CE14870 /CHR=2 /FEA=Genomic Cluster /DEF=glutathione S-transferase; Caenorhabditis elegans cDNA clone:yk637d10 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 72      6grp_high1_10_10 > 37      4grp_highest_8_8 > 22      4grp_high_8_8 > 06      6grp_highest_nonorm > 50      6grp_total > 17      4grp_total > 02      6grp_highest_sub > Cu      6grp_cgc > 06      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7240
1 2 3 4 range
A 1278.7
(-3)
P 		1386.1
(-2.9)
P 		1609.3
(-2.7)
P 		8045.4
(3)
P 		6767
B 1197.4
(-3)
P 		1206.5
(-3)
P 		1818.4
(-2.5)
P 		8244.6
(3)
P 		7047
C 1331.7
(-3)
P 		1281.1
(-3)
P 		1367.6
(-2.9)
P 		8437.6
(3)
P 		7157
avr 1269.3
(-3) 		1291.2
(-3) 		1598.4
(-2.7) 		8242.5
(3) 		6973

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 527
1 2 3 4 5 6 range
A 761.6
(3)
P 		400.3
(-1.8)
P 		459.9
(-1)
P 		336.5
(-2.6)
P 		307.4
(-3)
P 		482.5
(-0.7)
P 		454
B 584.4
(3)
P 		466.4
(0.7)
P 		574.5
(2.8)
P 		279.9
(-3)
P 		371.4
(-1.2)
P 		448.6
(0.3)
P 		305
C 807.1
(3)
P 		339.5
(-2.8)
P 		498.4
(-0.8)
P 		323.8
(-3)
P 		381.5
(-2.3)
P 		437.2
(-1.6)
P 		483
avr 717.7
(3) 		402.1
(-1.7) 		510.9
(-0.1) 		313.4
(-3) 		353.4
(-2.4) 		456.1
(-0.9) 		404
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1459
1 2 3 4 range
A 465.6
(-1.9)
P 		300.9
(-3)
P 		420.7
(-2.2)
P 		1177.7
(3)
P 		877
B 381.8
(-2.7)
P 		298
(-3)
P 		421.4
(-2.5)
P 		1756.9
(3)
P 		1459
C 440.8
(-2.6)
P 		368.3
(-3)
P 		476.6
(-2.4)
P 		1422.7
(3)
P 		1054
avr 429.4
(-2.4) 		322.4
(-3) 		439.6
(-2.4) 		1452.4
(3) 		1130

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 234
1 2 3 4 5 6 range
A 140.4
(2.8)
P 		142.4
(3)
P 		100.2
(-1.4)
P 		85.3
(-3)
P 		92.8
(-2.2)
P 		117.5
(0.4)
P 		57
B 203.3
(3)
P 		155.2
(0.8)
P 		139.5
(0)
P 		74.1
(-3)
P 		150.9
(0.6)
P 		167.3
(1.3)
P 		129
C 299.2
(3)
P 		103.6
(-2)
P 		126.8
(-1.4)
P 		65.1
(-3)
P 		123.5
(-1.5)
P 		146.3
(-0.9)
P 		234
avr 214.3
(3) 		133.7
(-0.5) 		122.2
(-1) 		74.8
(-3) 		122.4
(-1) 		143.7
(-0) 		140
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173938_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.23244
Sequence Type Exemplar sequence
Representative Public ID AV195077 NCBI
Target Description AV195077 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=Y48E1B.10 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV195077 /WB_GENE_ID=Y48E1B.10 /WP=CE14870 /CHR=2 /FEA=Genomic Cluster /DEF=glutathione S-transferase; Caenorhabditis elegans cDNA clone:yk637d10 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064457(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064457 NCBI Caenorhabditis elegans Glutathione S-Transferase family member (gst-20) (gst-20) mRNA, complete cds. 11/11 None
SNAP00000010065 ENSEMBL cdna:SNAP chromosome:CEL140:II:13608144:13608617:-1 9/11 None
GENEFINDER00000010071 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:13608144:13608707:-1 10/11 None
Y48E1B.10 ENSEMBL cdna:known chromosome:CEL140:II:13608087:13609676:-1 gene:Y48E1B.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13608109-13609619(-) 100.0 100.0
Public Domain and Genome References
Gene Title glutathione S-transferase
Gene Symbol gst-20
Ensembl Y48E1B.10
Entrez Gene 175008 Entrez gene
SwissProt O01987 EMBL-EBI
WormBase CE14870 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07700 Hypothetical protein Y48E1B.10 [Caenorhabditis elegans] emb|CAB02297.3| Hypothetical protein Y48E1B.10 [Caenorhabditis elegans] ref|NP_496858.1| Glutathione S-Transferase family member (gst-20) [Caenorhabditis elegans] 1.0E-112
blast CAB07700 Hypothetical protein Y48E1B.10 [Caenorhabditis elegans] emb|CAB02297.3| Hypothetical protein Y48E1B.10 [Caenorhabditis elegans] ref|NP_496858.1| Glutathione S-Transferase family member (gst-20) [Caenorhabditis elegans] 1.0E-100
blast CAE73255 Hypothetical protein CBG20671 [Caenorhabditis briggsae] 1.0E-91
blast CAB07700 Hypothetical protein Y48E1B.10 [Caenorhabditis elegans] emb|CAB02297.3| Hypothetical protein Y48E1B.10 [Caenorhabditis elegans] ref|NP_496858.1| Glutathione S-Transferase family member (gst-20) [Caenorhabditis elegans] 5.0E-81
blast CAE73255 Hypothetical protein CBG20671 [Caenorhabditis briggsae] 2.0E-79
blast CAE73255 Hypothetical protein CBG20671 [Caenorhabditis briggsae] 1.0E-65
blast CAA90726 Hypothetical protein T26C5.1 [Caenorhabditis elegans] ref|NP_495967.1| Glutathione S-Transferase family member (gst-13) [Caenorhabditis elegans] 2.0E-56
Protein Domains
Database ID Description E-Value
Pfam IPR004046 EMBL-EBI Glutathione S-transferase, C-terminal 0.0063
Pfam IPR004045 EMBL-EBI Glutathione S-transferase, N-terminal 2.3E-5
Pfam IPR004046 EMBL-EBI Glutathione S-transferase, C-terminal 0.0063
Pfam IPR004045 EMBL-EBI Glutathione S-transferase, N-terminal 3.3E-14
Pfam IPR004046 EMBL-EBI Glutathione S-transferase, C-terminal 0.0063
Pfam IPR004045 EMBL-EBI Glutathione S-transferase, N-terminal 5.4E-20
Sequence
Target Sequence 
>C. ELEGANS:173938_S_AT
gagatgtttctagacagctcttcgccctatccggcaccaaatacgaggatatccgcattg
agcatgcagactggccagctcaaaaacccaaaatgccctttggccaaatgcccgtgctcg
agctcagttcgggactccaaatcccacaatccatggcgatcgccaggtacctcgccaaaa
aattcggctatgccggaaaaaccgacgaggaggcagcgctcgccgacgccctcatcgatc
agttcaaggatttctacgcggagatcaagccatactattacgcgaaaatcggcgttcttc
agaatgacaccgaagaggagaagaagaagacgctgattccagctagagacaagttcctga
cgattatcgggaagttcctgaagcttagcatctccggattcttgttctccggcggactta
cctatgctgatttgatgatttgtgataatatgagaaccctaatcgcgtggtggccggaat
acttgaacgagtacccagacatcaaggcctggtaccagaaagtcgatggaatcccggaga
ttcgcaagcatcttgaatcgagcccgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGATGTTTCTAGACAGCTCTTCGC 569 395 57 Antisense
AGCATGCAGACTGGCCAGCTCAAAA 591 77 117 Antisense
CGAGCTCAGTTCGGGACTCCAAATC 630 247 175 Antisense
AAATCCCACAATCCATGGCGATCGC 104 119 195 Antisense
AAACCGACGAGGAGGCAGCGCTCGC 13 123 255 Antisense
ACGCCCTCATCGATCAGTTCAAGGA 97 91 282 Antisense
GTTCCTGAAGCTTAGCATCTCCGGA 568 441 430 Antisense
GGCGGACTTACCTATGCTGATTTGA 284 541 467 Antisense
TGAGAACCCTAATCGCGTGGTGGCC 419 567 507 Antisense
GAACGAGTACCCAGACATCAAGGCC 332 347 541 Antisense
CGCAAGCATCTTGAATCGAGCCCGG 125 255 599 Antisense
Sequence Source Affymetrix Proprietary Database