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[173936_s_at]

Description CEC8873_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=ZK1092.1 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C10887 /WB_GENE_ID=ZK1092.1 /WP=CE15527 /CHR=X /FEA=Genomic Cluster /DEF=(ST.LOUIS) TR:O02177 protein_id:AAB52867.1; C.elegans cDNA clone yk159a9 : 3prime end, single read.
Cluster 6grp_total > 81      4grp_total > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 69
1 2 3 4 range
A 29.9
(-0.6)
A 		20.9
(-3)
A 		22.6
(-2.5)
A 		43.3
(3)
A 		22
B 12.3
(-2.5)
A 		9.1
(-3)
A 		22.5
(-0.9)
A 		47.6
(3)
A 		39
C 40.5
(-0.4)
A 		27.7
(-1.5)
A 		11.2
(-3)
A 		77.9
(3)
P 		67
avr 27.6
(-1.6) 		19.2
(-2.9) 		18.8
(-3) 		56.3
(3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 16.8
(-3)
A 		19.1
(-2.6)
A 		26.3
(-1.3)
A 		35
(0.3)
A 		50.1
(3)
A 		20.1
(-2.4)
A 		33
B 40.1
(3)
P 		20.5
(-2.1)
P 		36.4
(2)
A 		31.2
(0.7)
A 		18.4
(-2.6)
A 		17
(-3)
A 		23
C 1.9
(-3)
A 		44
(3)
P 		9.6
(-1.9)
A 		36.7
(2)
A 		22.5
(-0.1)
A 		17
(-0.8)
A 		42
avr 19.6
(-2.4) 		27.9
(0.6) 		24.1
(-0.8) 		34.3
(3) 		30.3
(1.5) 		18
(-3) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 10.9
(3)
A 		4.5
(-3)
A 		5.9
(-1.7)
A 		6.3
(-1.3)
A 		6
B 3.9
(-1.7)
A 		2.2
(-3)
A 		5.2
(-0.7)
A 		10.1
(3)
A 		8
C 13.4
(3)
A 		8
(-0.4)
A 		3.9
(-3)
A 		13.1
(2.8)
P 		10
avr 9.4
(2.5) 		4.9
(-3) 		5
(-2.9) 		9.8
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 3.1
(-3)
A 		6.8
(-1.2)
A 		5.7
(-1.7)
A 		8.9
(-0.1)
A 		15.1
(3)
A 		4.9
(-2.1)
A 		12
B 13.9
(3)
P 		6.8
(-2.6)
P 		8.8
(-1)
A 		8.3
(-1.4)
A 		7.5
(-2.1)
A 		6.3
(-3)
A 		8
C 0.7
(-3)
A 		13.4
(3)
P 		2.4
(-2.2)
A 		7.4
(0.2)
A 		7.3
(0.1)
A 		5.7
(-0.6)
A 		13
avr 5.9
(-2.6) 		9
(1.6) 		5.6
(-3) 		8.2
(0.5) 		10
(3) 		5.6
(-3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173936_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26145
Sequence Type Exemplar sequence
Representative Public ID CEC8873 NCBI
Target Description CEC8873_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=ZK1092.1 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C10887 /WB_GENE_ID=ZK1092.1 /WP=CE15527 /CHR=X /FEA=Genomic Cluster /DEF=(ST.LOUIS) TR:O02177 protein_id:AAB52867.1; C.elegans cDNA clone yk159a9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078322(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078322 NCBI Caenorhabditis elegans T20F7.5 (T20F7.5) mRNA, complete cds. 11/11 A 
SNAP00000037345 ENSEMBL cdna:SNAP chromosome:CEL140:X:16845458:16847806:-1 11/11 None
GENEFINDER00000037354 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:16845458:16847987:-1 11/11 None
T20F7.5 ENSEMBL cdna:known chromosome:CEL140:X:16845289:16855407:-1 gene:T20F7.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:16845299-16846693(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T20F7.5
Entrez Gene 181733 Entrez gene
SwissProt O02165 EMBL-EBI
WormBase CE30187 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK18983 Hypothetical protein T20F7.5 [Caenorhabditis elegans] ref|NP_510723.2| T20F7.5 [Caenorhabditis elegans] 0.0
blast T25897 hypothetical protein T20F7.5 - Caenorhabditis elegans 0.0
blast AAK18983 Hypothetical protein T20F7.5 [Caenorhabditis elegans] ref|NP_510723.2| T20F7.5 [Caenorhabditis elegans] 1.0E-132
blast T25896 hypothetical protein T20F7.4 - Caenorhabditis elegans 1.0E-115
blast T25896 hypothetical protein T20F7.4 - Caenorhabditis elegans 2.0E-82
blast T25896 hypothetical protein T20F7.4 - Caenorhabditis elegans 1.0E-66
Sequence
Target Sequence 
>C. ELEGANS:173936_S_AT
gagctcagcgactatgaatctttggatatgagatcgattagacacggatctgacaaaatc
gactcatactttgatctggattcagagttccatgactacactcgtgaacaattgattctt
ccagaagaaggccggtttagaaaaacacacgatatttgcattttgagggaactggaagct
ataaagaattacaatcaaactctcgacttgaagcacgctcgtgctgttcgccaatatcag
tactggaaggataacatctatgacgagctttcattgttcatcaattacattgtcgaaatg
gtcaatgcgataccgaaaaatccgactgttgaactgtttgaagaatgggcaatattcaaa
actgatattccgcaaacttacacaatcgagaccatttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCTCAGCGACTATGAATCTTTGG 619 387 20 Antisense
AATCGACTCATACTTTGATCTGGAT 324 169 76 Antisense
GAGTTCCATGACTACACTCGTGAAC 526 397 104 Antisense
ACTCGTGAACAATTGATTCTTCCAG 377 99 119 Antisense
CAAACTCTCGACTTGAAGCACGCTC 486 191 215 Antisense
TGAAGCACGCTCGTGCTGTTCGCCA 356 575 228 Antisense
GCTGTTCGCCAATATCAGTACTGGA 406 295 242 Antisense
TGACGAGCTTTCATTGTTCATCAAT 286 571 280 Antisense
GAAAAATCCGACTGTTGAACTGTTT 517 355 334 Antisense
AACTGATATTCCGCAAACTTACACA 295 141 379 Antisense
AAACTTACACAATCGAGACCATTTT 507 123 393 Antisense
Sequence Source Affymetrix Proprietary Database