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[173935_at]

Description CEC8873_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=ZK1092.1 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C10887 /WB_GENE_ID=ZK1092.1 /WP=CE15527 /CHR=X /FEA=Genomic Cluster /DEF=(ST.LOUIS) TR:O02177 protein_id:AAB52867.1; C.elegans cDNA clone yk159a9 : 3prime end, single read.
Cluster 6grp_total > 90      4grp_total > 21      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 30.7
(-2.6)
P 		41.7
(-0.7)
A 		28
(-3)
A 		64.4
(3)
A 		36
B 42.9
(-0.2)
A 		52.3
(3)
A 		34.6
(-3)
A 		43.6
(0.1)
P 		18
C 71.4
(2.9)
A 		20.5
(-2.8)
A 		18.4
(-3)
A 		72.2
(3)
P 		54
avr 48.3
(0.9) 		38.2
(-1) 		27
(-3) 		60.1
(3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 33
(1.5)
A 		11.9
(-1.9)
A 		10.7
(-2.1)
A 		42
(3)
A 		29.3
(0.9)
A 		5.5
(-3)
A 		37
B 39.3
(3)
A 		36.8
(2.6)
M 		5.1
(-2.7)
A 		33.2
(2)
A 		22
(0.1)
A 		3.4
(-3)
A 		36
C 3.7
(-3)
A 		21.6
(0.7)
A 		29.4
(2.3)
A 		32.8
(3)
A 		13.1
(-1.1)
A 		23.2
(1)
A 		29
avr 25.3
(0.5) 		23.4
(0) 		15.1
(-2) 		36
(3) 		21.5
(-0.4) 		10.7
(-3) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 11.2
(3)
P 		9.1
(-0.2)
A 		7.3
(-3)
A 		9.4
(0.2)
A 		4
B 13.7
(3)
A 		12.9
(2.2)
A 		8
(-3)
A 		9.3
(-1.6)
P 		6
C 23.6
(3)
A 		5.9
(-3)
A 		6.4
(-2.8)
A 		12.2
(-0.9)
P 		18
avr 16.2
(3) 		9.3
(-1.6) 		7.2
(-3) 		10.3
(-0.9) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 6.1
(0.1)
A 		4.2
(-1.1)
A 		2.3
(-2.4)
A 		10.6
(3)
A 		8.8
(1.8)
A 		1.3
(-3)
A 		9
B 13.7
(3)
A 		12.2
(2.3)
M 		1.3
(-3)
A 		8.8
(0.6)
A 		8.9
(0.7)
A 		1.3
(-3)
A 		12
C 1.4
(-3)
A 		6.6
(1.9)
A 		7.5
(2.7)
A 		6.6
(1.9)
A 		4.2
(-0.4)
A 		7.8
(3)
A 		6
avr 7.1
(1.2) 		7.7
(1.8) 		3.7
(-2.8) 		8.7
(3) 		7.3
(1.4) 		3.5
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173935_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26145
Sequence Type Exemplar sequence
Representative Public ID CEC8873 NCBI
Target Description CEC8873_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=ZK1092.1 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C10887 /WB_GENE_ID=ZK1092.1 /WP=CE15527 /CHR=X /FEA=Genomic Cluster /DEF=(ST.LOUIS) TR:O02177 protein_id:AAB52867.1; C.elegans cDNA clone yk159a9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078322(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078322 NCBI Caenorhabditis elegans T20F7.5 (T20F7.5) mRNA, complete cds. 11/11 None
T20F7.5 ENSEMBL cdna:known chromosome:CEL140:X:16845289:16855407:-1 gene:T20F7.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:16845299-16846693(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T20F7.5
Entrez Gene 181733 Entrez gene
SwissProt O02165 EMBL-EBI
WormBase CE30187 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK18983 Hypothetical protein T20F7.5 [Caenorhabditis elegans] ref|NP_510723.2| T20F7.5 [Caenorhabditis elegans] 0.0
blast T25897 hypothetical protein T20F7.5 - Caenorhabditis elegans 0.0
blast T25896 hypothetical protein T20F7.4 - Caenorhabditis elegans 1.0E-66
Sequence
Target Sequence 
>C. ELEGANS:173935_AT
gagaccattttgtaatcttgcccacacatttctcacttggtgatcaattttaatttgtga
ttcgtttttattacccgttgtttcatttgatcaaatcacccttgtaaatagtgcaatcgt
catgatacttccgggtttcatgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGACCATTTTGTAATCTTGCCCAC 266 395 407 Antisense
ATTTTGTAATCTTGCCCACACATTT 94 15 413 Antisense
CCCACACATTTCTCACTTGGTGATC 226 257 427 Antisense
TCTCACTTGGTGATCAATTTTAATT 335 611 437 Antisense
TGTGATTCGTTTTTATTACCCGTTG 638 551 462 Antisense
TATTACCCGTTGTTTCATTTGATCA 193 661 475 Antisense
TCATTTGATCAAATCACCCTTGTAA 487 619 489 Antisense
TCACCCTTGTAAATAGTGCAATCGT 212 623 502 Antisense
GTGCAATCGTCATGATACTTCCGGG 348 481 517 Antisense
AATCGTCATGATACTTCCGGGTTTC 277 169 521 Antisense
GTCATGATACTTCCGGGTTTCATGG 333 467 525 Antisense
Sequence Source Affymetrix Proprietary Database