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[173930_s_at]

Description CE12F2 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=C44B7.10 /5_PRIME_EXT_DB=WormBase Gene ID /GB=M88977 /WB_GENE_ID=C44B7.10 /WP=CE02538 /CHR=2 /FEA=Genomic Cluster /DEF=CEL12F2 Chris Martin sorted cDNA library Caenorhabditis elegans cDNA clone cm12f2 5prime, mRNA sequence.
Cluster 6grp_highest_10_10 > 25      6grp_high1_10_10 > 40      4grp_highest_8_8 > 23      4grp_high_8_8 > 13      6grp_highest_nonorm > 08      6grp_total > 41      4grp_total > 11      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10368
1 2 3 4 range
A 17402.4
(-2.4)
P 		19149.4
(-1.2)
P 		16542.8
(-3)
P 		25408.5
(3)
P 		8866
B 17903.8
(-2.5)
P 		17786.9
(-2.6)
P 		17495.5
(-3)
P 		22281.5
(3)
P 		4786
C 16850.1
(-1.8)
P 		16565.7
(-2)
P 		15040.5
(-3)
P 		24170.7
(3)
P 		9130
avr 17385.4
(-2.2) 		17834
(-1.8) 		16359.6
(-3) 		23953.6
(3) 		7594

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9691
1 2 3 4 5 6 range
A 20916.9
(0.8)
P 		19385.9
(-0.6)
P 		23226
(3)
P 		18823.2
(-1.1)
P 		16873.8
(-3)
P 		16837
(-3)
P 		6389
B 17137.6
(-1.4)
P 		18788.4
(-0.4)
P 		24321.8
(3)
P 		19875.5
(0.2)
P 		15075.7
(-2.7)
P 		14631
(-3)
P 		9691
C 16678.7
(-2.5)
P 		19224.4
(-0.1)
P 		22485.2
(3)
P 		21444.9
(2)
P 		17040.1
(-2.1)
P 		16134.1
(-3)
P 		6351
avr 18244.4
(-1.1) 		19132.9
(-0.4) 		23344.3
(3) 		20047.9
(0.4) 		16329.9
(-2.6) 		15867.4
(-3) 		7477
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2617
1 2 3 4 range
A 6336.2
(3)
P 		4156.8
(-2)
P 		4324.6
(-1.6)
P 		3719.3
(-3)
P 		2617
B 5709.4
(3)
P 		4393
(-1.8)
P 		4054.1
(-3)
P 		4748.2
(-0.5)
P 		1655
C 5577.9
(3)
P 		4762.7
(-0.3)
P 		5242.1
(1.7)
P 		4075.6
(-3)
P 		1502
avr 5874.5
(3) 		4437.5
(-2.1) 		4540.3
(-1.7) 		4181
(-3) 		1694

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3039
1 2 3 4 5 6 range
A 3855.9
(-3)
P 		6894.6
(3)
P 		5058.1
(-0.6)
P 		4774
(-1.2)
P 		5091.8
(-0.6)
P 		4099.3
(-2.5)
P 		3039
B 5963.1
(1.2)
P 		6253.9
(3)
P 		5906.1
(0.9)
P 		5264.3
(-3)
P 		6125.1
(2.2)
P 		5455.8
(-1.8)
P 		990
C 6182.1
(3)
P 		5866
(2)
P 		5722.9
(1.5)
P 		4312.6
(-3)
P 		5513.9
(0.9)
P 		5401
(0.5)
P 		1870
avr 5333.7
(-0.9) 		6338.2
(3) 		5562.4
(0) 		4783.6
(-3) 		5576.9
(0.1) 		4985.4
(-2.2) 		1555
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173930_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.23540
Sequence Type Exemplar sequence
Representative Public ID CE12F2 NCBI
Target Description CE12F2 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=C44B7.10 /5_PRIME_EXT_DB=WormBase Gene ID /GB=M88977 /WB_GENE_ID=C44B7.10 /WP=CE02538 /CHR=2 /FEA=Genomic Cluster /DEF=CEL12F2 Chris Martin sorted cDNA library Caenorhabditis elegans cDNA clone cm12f2 5prime, mRNA sequence.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063008(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063008 NCBI Caenorhabditis elegans C44B7.10 (C44B7.10) mRNA, complete cds. 11/11 None
SNAP00000042327 ENSEMBL cdna:SNAP chromosome:CEL140:II:6888630:6890328:-1 11/11 None
GENEFINDER00000042343 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6888630:6890328:-1 11/11 None
C44B7.10.4 ENSEMBL cdna:known chromosome:CEL140:II:6888259:6890329:-1 gene:C44B7.10 11/11 None
C44B7.10.1 ENSEMBL cdna:known chromosome:CEL140:II:6888473:6890329:-1 gene:C44B7.10 11/11 None
C44B7.10.2 ENSEMBL cdna:known chromosome:CEL140:II:6888473:6890341:-1 gene:C44B7.10 11/11 None
C44B7.10.3 ENSEMBL cdna:known chromosome:CEL140:II:6888474:6890331:-1 gene:C44B7.10 11/11 None
C44B7.10.5 ENSEMBL cdna:known chromosome:CEL140:II:6888495:6890711:-1 gene:C44B7.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6888522-6893561(-) 99.96 99.96
Public Domain and Genome References
Gene Title
Ensembl C44B7.10
Entrez Gene 174128 Entrez gene
SwissProt Q18599 EMBL-EBI
WormBase CE32326 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1635589_AT dm
DROSGENOME1:153339_AT dm
DROSOPHILA_2:1628339_A_AT dm
DROSOPHILA_2:1625435_AT dm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6084 acetyl-CoA metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3824 catalytic activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAN63431 Hypothetical protein C44B7.10 [Caenorhabditis elegans] ref|NP_495409.3| C44B7.10 [Caenorhabditis elegans] 0.0
blast CAE65987 Hypothetical protein CBG11178 [Caenorhabditis briggsae] 0.0
blast T15803 hypothetical protein C44B7.10 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003702 EMBL-EBI Acetyl-CoA hydrolase/transferase 3.0E-86
Sequence
Target Sequence 
>C. ELEGANS:173930_S_AT
gtttacggatcgaccaagctctacgactacctcaacgataatccattgatcgagtttgga
gatgttaactgggtcaatgatccagctgttgttcgcaaaaatcctaaagtcactgccatc
aactctgccgtcgagattgatttgaccggacaagttgtgtccgattcagttggaaaacga
ttcttgtctggatttggaggacaagttgattttatccgtggagcagcaattggaaacgat
ggtctcggaaagccaattattgcacttccatcaatttcaaagaagggacagagcaagatt
gttccaacaatcaacgaaggagctggagttgttacttcccgtgctcatgttcactatgtc
gttaccgaatatggaattgctcaactttggggcaagaatatgcgtcaacgtgcctacgaa
ttgatcaaaatctctcatccaagtcagcgtgaatctctcgacaaggctgcattcgaccgc
ttgaaggtga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTACGGATCGACCAAGCTCTACG 348 447 1964 Antisense
TCTACGACTACCTCAACGATAATCC 260 607 1983 Antisense
GTCAATGATCCAGCTGTTGTTCGCA 239 463 2036 Antisense
CTAAAGTCACTGCCATCAACTCTGC 95 225 2067 Antisense
AAGCCAATTATTGCACTTCCATCAA 354 149 2213 Antisense
AGGAGCTGGAGTTGTTACTTCCCGT 248 49 2281 Antisense
CCCGTGCTCATGTTCACTATGTCGT 225 259 2301 Antisense
GAATATGCGTCAACGTGCCTACGAA 644 325 2359 Antisense
CAAAATCTCTCATCCAAGTCAGCGT 96 191 2389 Antisense
GAATCTCTCGACAAGGCTGCATTCG 638 327 2414 Antisense
GCTGCATTCGACCGCTTGAAGGTGA 448 293 2429 Antisense
Sequence Source Affymetrix Proprietary Database