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[173924_at]

Description AV203680 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=C33B4.3 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV203680 /WB_GENE_ID=C33B4.3 /WP=CE01508 /CHR=2 /FEA=Genomic Cluster /DEF=ankyrin and proline rich domains; Caenorhabditis elegans cDNA clone:yk579g10 : 5prime end, single read.
Cluster 6grp_high1_10_10 > 19      6grp_total > 05      4grp_total > 13      6grp_cgc > 03      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 172
1 2 3 4 range
A 150.9
(0.7)
P 		115.2
(-3)
A 		119.5
(-2.6)
P 		172.7
(3)
A 		58
B 171.6
(-1.3)
P 		127
(-3)
A 		159.6
(-1.8)
M 		286.7
(3)
A 		160
C 203.7
(3)
A 		202.3
(2.9)
A 		133.5
(-3)
A 		138
(-2.6)
A 		70
avr 175.4
(0.7) 		148.2
(-2) 		137.5
(-3) 		199.1
(3) 		62

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 159
1 2 3 4 5 6 range
A 224.2
(2.5)
P 		132.5
(-2.9)
M 		168.1
(-0.8)
M 		131.4
(-3)
P 		231.8
(3)
P 		134.4
(-2.8)
P 		100
B 237.4
(2.5)
P 		250.7
(3)
P 		92
(-3)
P 		136.1
(-1.3)
P 		134.5
(-1.4)
P 		141.3
(-1.1)
P 		159
C 228.7
(3)
P 		209.1
(2.1)
P 		115.7
(-2.4)
A 		139.8
(-1.2)
P 		154.4
(-0.5)
P 		103.1
(-3)
A 		126
avr 230.1
(3) 		197.4
(1.1) 		125.3
(-3) 		135.8
(-2.4) 		173.6
(-0.2) 		126.3
(-2.9) 		105
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 54.9
(3)
P 		25
(-3)
A 		31.2
(-1.8)
P 		25.3
(-2.9)
A 		30
B 54.7
(1.7)
P 		31.4
(-3)
A 		37
(-1.9)
M 		61.1
(3)
A 		30
C 67.4
(3)
A 		58.2
(1.7)
A 		46.5
(0.2)
A 		23.3
(-3)
A 		44
avr 59
(3) 		38.2
(-2.6) 		38.2
(-2.6) 		36.6
(-3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 41.3
(-1.6)
P 		47.1
(-0.7)
M 		36.6
(-2.4)
M 		33.3
(-2.9)
P 		69.9
(3)
P 		32.7
(-3)
P 		37
B 82.6
(2.9)
P 		83.4
(3)
P 		22.3
(-3)
P 		36
(-1.7)
P 		54.6
(0.2)
P 		52.7
(-0)
P 		61
C 84.8
(3)
P 		63.8
(0.8)
P 		29.4
(-2.9)
A 		28.1
(-3)
P 		50
(-0.7)
P 		34.5
(-2.3)
A 		57
avr 69.6
(3) 		64.8
(2.3) 		29.4
(-3) 		32.5
(-2.5) 		58.2
(1.3) 		40
(-1.4) 		40
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173924_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.23260
Sequence Type Exemplar sequence
Representative Public ID AV203680 NCBI
Target Description AV203680 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=C33B4.3 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV203680 /WB_GENE_ID=C33B4.3 /WP=CE01508 /CHR=2 /FEA=Genomic Cluster /DEF=ankyrin and proline rich domains; Caenorhabditis elegans cDNA clone:yk579g10 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026835(11), NM_001026836(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026835 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-67) (tag-67) mRNA, complete cds. 11/11 None
NM_001026836 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-67) (tag-67) mRNA, complete cds. 11/11 None
C33B4.3a ENSEMBL cdna:known chromosome:CEL140:II:11384500:11390689:-1 gene:C33B4.3 11/11 A 
C33B4.3b ENSEMBL cdna:known chromosome:CEL140:II:11384549:11390767:-1 gene:C33B4.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11384556-11390687(-) 94.62 100.0
Public Domain and Genome References
Ensembl C33B4.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA88324 Hypothetical protein C33B4.3a [Caenorhabditis elegans] ref|NP_001022006.1| Temporarily Assigned Gene name family member (tag-67) [Caenorhabditis elegans] 0.0
blast CAE59515 Hypothetical protein CBG02907 [Caenorhabditis briggsae] 0.0
blast CAE54886 Hypothetical protein C33B4.3b [Caenorhabditis elegans] ref|NP_001022007.1| Temporarily Assigned Gene name family member (tag-67) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
scop a.4.1.Homeodomain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain 6.90000009536743
scop a.4.1.Homeodomain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain 5.40000009536743
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 2.8E-11
Pfam IPR002110 EMBL-EBI Ankyrin 0.024
Pfam IPR002110 EMBL-EBI Ankyrin 6.5E-6
Pfam IPR002110 EMBL-EBI Ankyrin 0.38
Pfam IPR002110 EMBL-EBI Ankyrin 0.0031
Pfam IPR002110 EMBL-EBI Ankyrin 1.9E-7
Pfam IPR002110 EMBL-EBI Ankyrin 22.0
Pfam IPR001660 EMBL-EBI Sterile alpha motif SAM 2.8E-15
Sequence
Target Sequence 
>C. ELEGANS:173924_AT
gcctcctccagtgatttatgattttcccccctcatttctactttctcgattttctccgcg
tagctggctttatatatttgtatataatattgtttcatttgtttttgatagtgaaaccca
attctaattgaccatcgtgtctttatcctgctcatcatcatttttcattaattttcttcc
atttttcggtgtcctaggg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCTCCTCCAGTGATTTATGATTTT 301 281 3333 Antisense
TCCAGTGATTTATGATTTTCCCCCC 17 591 3339 Antisense
TTTCTCCGCGTAGCTGGCTTTATAT 705 669 3383 Antisense
TCTCCGCGTAGCTGGCTTTATATAT 645 609 3385 Antisense
CGTAGCTGGCTTTATATATTTGTAT 681 245 3391 Antisense
ATATAATATTGTTTCATTTGTTTTT 651 19 3414 Antisense
TTTTTGATAGTGAAACCCAATTCTA 95 675 3434 Antisense
GAAACCCAATTCTAATTGACCATCG 534 355 3445 Antisense
ATTGACCATCGTGTCTTTATCCTGC 615 5 3459 Antisense
CATTTTTCATTAATTTTCTTCCATT 618 215 3491 Antisense
TCTTCCATTTTTCGGTGTCCTAGGG 105 617 3507 Antisense
Sequence Source Affymetrix Proprietary Database