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[173923_at]

Description CE18A12 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F36A2.1 /5_PRIME_EXT_DB=WormBase Gene ID /GB=M89157 /WB_GENE_ID=F36A2.1 /WP=CE09941 /CHR=1 /FEA=Genomic Cluster /DEF=CEL18A12 Chris Martin sorted cDNA library Caenorhabditis elegans cDNA clone cm18a12 5prime, mRNA sequence.
Cluster 6grp_highest_10_10 > 85      6grp_high1_10_10 > 68      4grp_highest_8_8 > 51      4grp_high_8_8 > 24      6grp_highest_nonorm > 83      6grp_total > 58      4grp_total > 39      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 373
1 2 3 4 range
A 672.7
(3)
P 		316.2
(-2.7)
P 		299.8
(-3)
P 		369
(-1.9)
P 		373
B 657.3
(3)
P 		337
(-3)
P 		365.2
(-2.5)
P 		416.7
(-1.5)
P 		320
C 619.9
(3)
P 		366.8
(-3)
P 		389.3
(-2.5)
P 		450.2
(-1)
P 		253
avr 650
(3) 		340
(-3) 		351.4
(-2.8) 		412
(-1.6) 		310

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 509
1 2 3 4 5 6 range
A 521.6
(0.4)
P 		498.1
(-0.2)
P 		461.1
(-1.2)
P 		394.3
(-3)
P 		574.9
(1.8)
P 		619.7
(3)
P 		225
B 576.2
(1.6)
P 		449.3
(-0.2)
P 		246.7
(-3)
P 		541.9
(1.1)
P 		444.9
(-0.2)
P 		674.9
(3)
P 		428
C 477.3
(-1.5)
P 		583.6
(0.2)
P 		493.7
(-1.2)
P 		415.8
(-2.5)
P 		382.6
(-3)
P 		755.6
(3)
P 		373
avr 525
(-0.4) 		510.3
(-0.7) 		400.5
(-3) 		450.7
(-1.9) 		467.5
(-1.6) 		683.4
(3) 		283
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 191
1 2 3 4 range
A 244.9
(3)
P 		68.6
(-2.5)
P 		78.4
(-2.2)
P 		54
(-3)
P 		191
B 209.6
(3)
P 		83.2
(-3)
P 		84.6
(-2.9)
P 		88.8
(-2.7)
P 		126
C 205.2
(3)
P 		105.5
(-1.6)
P 		135.7
(-0.2)
P 		75.9
(-3)
P 		129
avr 219.9
(3) 		85.8
(-2.5) 		99.6
(-1.9) 		72.9
(-3) 		147

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 193
1 2 3 4 5 6 range
A 96.2
(-3)
P 		177.1
(3)
P 		100.4
(-2.7)
P 		100
(-2.7)
P 		173.5
(2.7)
P 		150.9
(1.1)
P 		81
B 200.5
(1.4)
P 		149.6
(-0.2)
P 		59.9
(-3)
P 		143.5
(-0.4)
P 		180.7
(0.8)
P 		251.7
(3)
P 		192
C 176.9
(0.3)
P 		178.1
(0.3)
P 		125.7
(-1.5)
P 		83.6
(-3)
P 		123.8
(-1.6)
P 		252.9
(3)
P 		169
avr 157.9
(0) 		168.3
(0.6) 		95.3
(-3) 		109
(-2.3) 		159.3
(0.1) 		218.5
(3) 		123
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173923_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.23121
Sequence Type Exemplar sequence
Representative Public ID CE18A12 NCBI
Target Description CE18A12 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F36A2.1 /5_PRIME_EXT_DB=WormBase Gene ID /GB=M89157 /WB_GENE_ID=F36A2.1 /WP=CE09941 /CHR=1 /FEA=Genomic Cluster /DEF=CEL18A12 Chris Martin sorted cDNA library Caenorhabditis elegans cDNA clone cm18a12 5prime, mRNA sequence.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059979(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059979 NCBI Caenorhabditis elegans F36A2.1a (F36A2.1) mRNA, complete cds. 11/11 None
F36A2.1a.1 ENSEMBL cdna:known chromosome:CEL140:I:8812927:8816411:-1 gene:F36A2.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000004944 1/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
172691 2 1 NM_059979 173923_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8812896-8816032(-) 100.0 100.0
Public Domain and Genome References
Ensembl F36A2.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03066 Hypothetical protein F36A2.1a [Caenorhabditis elegans] ref|NP_492380.1| F36A2.1a [Caenorhabditis elegans] 0.0
blast CAD56583 Hypothetical protein F36A2.1b [Caenorhabditis elegans] ref|NP_871883.1| F36A2.1b [Caenorhabditis elegans] 0.0
blast CAE66976 Hypothetical protein CBG12372 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR006903 EMBL-EBI Protein of unknown function DUF618 3.1E-38
Sequence
Target Sequence 
>C. ELEGANS:173923_AT
gattacaagttccaattagttccaaatttgccaaatatacgcatttaccaaaaacctaat
ctcattgtttatctccttactctccgagttttgtttcctgttgactttttttcaaattcg
aatttccttcacaagattctcattcactgattttctctgatttcaaagttttgcatctct
tctttacccttgaaattttctatgtaatcacctgggttatatctacctctgtcttatttt
cccacaatattttgtgcctcct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTACAAGTTCCAATTAGTTCCAA 149 429 1951 Antisense
GCATTTACCAAAAACCTAATCTCAT 203 307 1991 Antisense
AATCTCATTGTTTATCTCCTTACTC 697 169 2008 Antisense
CTTACTCTCCGAGTTTTGTTTCCTG 71 223 2026 Antisense
TTTCCTTCACAAGATTCTCATTCAC 455 669 2073 Antisense
TCTCATTCACTGATTTTCTCTGATT 416 613 2088 Antisense
CATCTCTTCTTTACCCTTGAAATTT 172 213 2124 Antisense
AATTTTCTATGTAATCACCTGGGTT 501 175 2144 Antisense
ACCTGGGTTATATCTACCTCTGTCT 229 87 2160 Antisense
CTCTGTCTTATTTTCCCACAATATT 145 233 2177 Antisense
TTTCCCACAATATTTTGTGCCTCCT 277 671 2188 Antisense
Sequence Source Affymetrix Proprietary Database