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[173920_at] Acetyl-coa acetyltransferase

Description AV196238 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=B0303.3 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV196238 /WB_GENE_ID=B0303.3 /WP=CE00561 /CHR=3 /FEA=Genomic Cluster /DEF=Acetyl-coa acetyltransferase; Caenorhabditis elegans cDNA clone:yk651g2 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 93      6grp_high1_10_10 > 49      4grp_highest_8_8 > 19      4grp_high_8_8 > 63      6grp_highest_nonorm > 68      6grp_total > 49      4grp_total > 40      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 864
1 2 3 4 range
A 1863.1
(-0.8)
P 		2170.7
(1.7)
P 		2332.7
(3)
P 		1593.9
(-3)
P 		739
B 1984.2
(-0)
P 		1580.8
(-3)
P 		1900.4
(-0.6)
P 		2389.4
(3)
P 		809
C 1743.4
(-3)
P 		1795.8
(-2.6)
P 		2444.6
(3)
P 		1920.9
(-1.5)
P 		701
avr 1863.6
(-2.8) 		1849.1
(-3) 		2225.9
(3) 		1968.1
(-1.1) 		377

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1373
1 2 3 4 5 6 range
A 1955
(0)
P 		1577.3
(-2.7)
P 		1713.2
(-1.7)
P 		1538.4
(-3)
P 		2188.4
(1.7)
P 		2366
(3)
P 		828
B 1917.7
(-0.2)
P 		1695.2
(-1.3)
P 		1349.1
(-3)
P 		1665.4
(-1.4)
P 		2067.8
(0.6)
P 		2556.5
(3)
P 		1207
C 2722.5
(3)
P 		1566.9
(-3)
P 		1713.1
(-2.2)
P 		1582.8
(-2.9)
P 		2043.8
(-0.5)
P 		2057.3
(-0.5)
P 		1156
avr 2198.4
(2) 		1613.1
(-2.8) 		1591.8
(-3) 		1595.5
(-3) 		2100
(1.1) 		2326.6
(3) 		735
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 619
1 2 3 4 range
A 678.4
(3)
P 		471.2
(0.2)
P 		609.8
(2.1)
P 		233.3
(-3)
P 		445
B 632.7
(3)
P 		390.4
(-3)
P 		440.4
(-1.8)
P 		509.2
(-0.1)
P 		242
C 577.1
(-0.1)
P 		516.3
(-0.8)
P 		852
(3)
P 		323.9
(-3)
P 		528
avr 629.4
(2.9) 		459.3
(-0.8) 		634.1
(3) 		355.5
(-3) 		279

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 691
1 2 3 4 5 6 range
A 360.4
(-3)
P 		561
(1)
P 		373.1
(-2.7)
P 		390.2
(-2.4)
P 		660.4
(3)
P 		576.1
(1.3)
P 		300
B 667.3
(0.3)
P 		564.3
(-0.7)
P 		327.6
(-3)
P 		441.1
(-1.9)
P 		840.1
(1.9)
P 		953.3
(3)
P 		626
C 1009.1
(3)
P 		478.1
(-1.6)
P 		436
(-2)
P 		318.3
(-3)
P 		661.4
(-0)
P 		688.7
(0.2)
P 		691
avr 678.9
(2) 		534.5
(-0.4) 		378.9
(-3) 		383.2
(-2.9) 		720.6
(2.7) 		739.4
(3) 		361
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173920_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.23929
Sequence Type Exemplar sequence
Representative Public ID AV196238 NCBI
Target Description AV196238 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=B0303.3 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV196238 /WB_GENE_ID=B0303.3 /WP=CE00561 /CHR=3 /FEA=Genomic Cluster /DEF=Acetyl-coa acetyltransferase; Caenorhabditis elegans cDNA clone:yk651g2 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066514(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066514 NCBI Caenorhabditis elegans B0303.3 (B0303.3) mRNA, complete cds. 11/11 None
B0303.3.1 ENSEMBL cdna:known chromosome:CEL140:III:8686175:8688068:-1 gene:B0303.3 11/11 A 
B0303.3.2 ENSEMBL cdna:known chromosome:CEL140:III:8686175:8688073:-1 gene:B0303.3 11/11 A 
B0303.3.3 ENSEMBL cdna:known chromosome:CEL140:III:8686193:8688359:-1 gene:B0303.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8686227-8688061(-) 97.41 100.0
Public Domain and Genome References
Gene Title Acetyl-coa acetyltransferase
Ensembl B0303.3
Entrez Gene 176216 Entrez gene
SwissProt P34255 EMBL-EBI
WormBase CE00561 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1598038_S_AT similar to Trifunctional enzyme beta subunit, mitochondrial precursor (TP-beta) cfa
CANINE:1588472_AT similar to Trifunctional enzyme beta subunit, mitochondrial precursor (TP-beta) cfa
CANINE_2:CFAAFFX.7396.1.S1_AT similar to Trifunctional enzyme beta subunit, mitochondrial precursor (TP-beta) cfa
DROSOPHILA_2:1634869_AT Thiolase dm
DROSGENOME1:152501_AT Thiolase dm
CHICKEN:GGA.6352.1.S1_AT hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), beta subunit gga
HG-U133A:201007_AT hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), beta subunit hs
HG-U133_PLUS_2:201007_AT hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), beta subunit hs
HG-FOCUS:201007_AT hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), beta subunit hs
HG-U133A_2:201007_AT hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), beta subunit hs
HUGENEFL:D16481_AT hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), beta subunit hs
U133_X3P:G4504326_3P_AT hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), beta subunit hs
HG-U95AV2:39741_AT hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), beta subunit hs
HG-U95D:74819_AT hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), beta subunit hs
HUGENEFL:U49441_AT Hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), beta subunit hs
HG-U95D:72330_AT Hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), beta subunit hs
MOE430A:1426522_AT hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), beta subunit mm
MOUSE430A_2:1426522_AT hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), beta subunit mm
MOUSE430_2:1426522_AT hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), beta subunit mm
MOUSE430A_2:1437172_X_AT hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), beta subunit mm
MOE430A:1437172_X_AT hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), beta subunit mm
MOUSE430_2:1437172_X_AT hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), beta subunit mm
MG-U74AV2:96913_AT hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), beta subunit mm
MG-U74CV2:139046_AT Hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), beta subunit (Hadhb), mRNA mm
MOE430B:1442732_AT Hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), beta subunit (Hadhb), mRNA mm
MOUSE430_2:1442732_AT Hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), beta subunit (Hadhb), mRNA mm
MU19KSUBC:TC39108_AT Hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), beta subunit (Hadhb), mRNA mm
MU19KSUBC:TC39108_G_AT Hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), beta subunit (Hadhb), mRNA mm
RG-U34A:D16479_AT hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), beta subunit rn
RAE230A:1367694_AT hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), beta subunit rn
RAT230_2:1367694_AT hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), beta subunit rn
Protein Similarities
Method ID Description E-Value
blast AAA27897 Hypothetical protein B0303.3 [Caenorhabditis elegans] ref|NP_498915.1| B0303.3 [Caenorhabditis elegans] sp|P34255|YKA3_CAEEL Hypothetical protein B0303.3 in chromosome III 0.0
blast CAE62725 Hypothetical protein CBG06885 [Caenorhabditis briggsae] 0.0
blast AAH45222 Thiolase-prov protein [Xenopus laevis] 1.0E-151
Protein Domains
Database ID Description E-Value
Pfam IPR002155 EMBL-EBI Thiolase 5.6E-74
Pfam IPR002155 EMBL-EBI Thiolase 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:173920_AT
tactttaaacccacttttctgtatgataaattagtgattgtcccaactatttattcttcc
catttctgccattttcccgtatttctctttttaaatgtttatgtgtatagattgtagcgg
ttgtcgtgccttttcgtctcctcgtaattctactggtcatttctgaacactttctttttc
cttttcgatattctgtcaaatatcaccatcattgccatcaccaaaaaggaagtggtacta
actttactgaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACTTTAAACCCACTTTTCTGTATG 332 101 1370 Antisense
AACCCACTTTTCTGTATGATAAATT 225 143 1377 Antisense
ATGATAAATTAGTGATTGTCCCAAC 570 45 1392 Antisense
GATTGTCCCAACTATTTATTCTTCC 37 435 1405 Antisense
AGATTGTAGCGGTTGTCGTGCCTTT 235 65 1478 Antisense
AATTCTACTGGTCATTTCTGAACAC 29 177 1515 Antisense
CATTTCTGAACACTTTCTTTTTCCT 384 215 1527 Antisense
CTTTTTCCTTTTCGATATTCTGTCA 666 221 1543 Antisense
TATTCTGTCAAATATCACCATCATT 83 665 1558 Antisense
CACCATCATTGCCATCACCAAAAAG 654 201 1573 Antisense
GGAAGTGGTACTAACTTTACTGAAT 454 531 1597 Antisense
Sequence Source Affymetrix Proprietary Database