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[173918_s_at]

Description C70780 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=C36B7.5 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C70780 /WB_GENE_ID=C36B7.5 /WP=CE25806 /CHR=X /FEA=Genomic Cluster /DEF=type-I thrombospondin TSR repeats (ST.LOUIS); C.elegans cDNA clone yk431a11 : 5prime end, single read.
Cluster 6grp_total > 39      4grp_total > 25      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 78
1 2 3 4 range
A 41.1
(-3)
P 		60.2
(3)
A 		41.5
(-2.9)
A 		57.7
(2.2)
A 		19
B 36.5
(-3)
A 		46.7
(3)
A 		39.2
(-1.4)
A 		45.9
(2.5)
A 		10
C 2.7
(-3)
A 		20.4
(-1.6)
A 		47.9
(0.5)
A 		80.5
(3)
M 		78
avr 26.8
(-3) 		42.4
(-0.3) 		42.9
(-0.2) 		61.4
(3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 31.5
(0.9)
A 		20.6
(-0.7)
A 		37.4
(1.7)
A 		46.6
(3)
M 		35.4
(1.4)
A 		4.1
(-3)
A 		43
B 18
(-1.1)
A 		22.9
(-0.4)
A 		5.1
(-3)
A 		22.2
(-0.5)
A 		35.3
(1.4)
A 		46.6
(3)
A 		42
C 39
(3)
A 		38.6
(2.9)
A 		11.1
(-1.7)
A 		3.2
(-3)
A 		22.3
(0.2)
A 		36.7
(2.6)
A 		36
avr 29.5
(2.3) 		27.4
(1.4) 		17.9
(-3) 		24
(-0.2) 		31
(3) 		29.1
(2.1) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 15
(3)
P 		13.1
(1.3)
A 		10.9
(-0.7)
A 		8.4
(-3)
A 		7
B 11.7
(3)
A 		11.5
(2.5)
A 		9.1
(-3)
A 		9.8
(-1.4)
A 		3
C 0.9
(-3)
A 		5.9
(-1.1)
A 		16.7
(3)
A 		13.6
(1.8)
M 		16
avr 9.2
(-3) 		10.2
(-1) 		12.2
(3) 		10.6
(-0.2) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 5.8
(-0.3)
A 		7.3
(0.5)
A 		8.1
(0.9)
A 		11.8
(3)
M 		10.7
(2.4)
A 		1
(-3)
A 		11
B 6.3
(-1.1)
A 		7.6
(-0.6)
A 		1.2
(-3)
A 		5.9
(-1.3)
A 		14.3
(1.9)
A 		17.4
(3)
A 		16
C 14.5
(3)
A 		11.8
(1.8)
A 		2.8
(-2.1)
A 		0.7
(-3)
A 		7.2
(-0.2)
A 		12.3
(2)
A 		14
avr 8.9
(1.4) 		8.9
(1.4) 		4
(-3) 		6.1
(-1.1) 		10.7
(3) 		10.2
(2.6) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173918_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25892
Sequence Type Exemplar sequence
Representative Public ID C70780 NCBI
Target Description C70780 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=C36B7.5 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C70780 /WB_GENE_ID=C36B7.5 /WP=CE25806 /CHR=X /FEA=Genomic Cluster /DEF=type-I thrombospondin TSR repeats (ST.LOUIS); C.elegans cDNA clone yk431a11 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076793(11), NM_076794(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076793 NCBI Caenorhabditis elegans C36B7.5a (C36B7.5) mRNA, complete cds. 11/11 None
NM_076794 NCBI Caenorhabditis elegans C36B7.5b (C36B7.5) mRNA, complete cds. 10/11 None
SNAP00000024835 ENSEMBL cdna:SNAP chromosome:CEL140:X:7089176:7096034:-1 10/11 None
C36B7.5b ENSEMBL cdna:known chromosome:CEL140:X:7089176:7096285:-1 gene:C36B7.5 10/11 None
C36B7.5a ENSEMBL cdna:known chromosome:CEL140:X:7089176:7096285:-1 gene:C36B7.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000024849 7/11 Cross Hyb Matching Probes None
GENEFINDER00000024848 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7089175-7096285(-) 100.0 100.0
Public Domain and Genome References
Ensembl C36B7.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_509194 C36B7.5a [Caenorhabditis elegans] gb|AAK68231.1| Hypothetical protein C36B7.5a [Caenorhabditis elegans] 0.0
blast NP_509195 C36B7.5b [Caenorhabditis elegans] gb|AAK68232.1| Hypothetical protein C36B7.5b [Caenorhabditis elegans] 0.0
blast CAE65839 Hypothetical protein CBG10970 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000884 EMBL-EBI Thrombospondin, type I 1.9E-6
Pfam IPR000884 EMBL-EBI Thrombospondin, type I 5.9E-12
Pfam IPR000884 EMBL-EBI Thrombospondin, type I 1.3E-9
Pfam IPR000884 EMBL-EBI Thrombospondin, type I 2.1E-12
Pfam IPR000884 EMBL-EBI Thrombospondin, type I 3.9E-6
Pfam IPR000884 EMBL-EBI Thrombospondin, type I 3.7E-7
Pfam IPR000884 EMBL-EBI Thrombospondin, type I 3.7E-7
Pfam IPR000884 EMBL-EBI Thrombospondin, type I 1.9E-6
Pfam IPR000884 EMBL-EBI Thrombospondin, type I 1.3E-6
Pfam IPR000884 EMBL-EBI Thrombospondin, type I 1.3E-9
Pfam IPR000884 EMBL-EBI Thrombospondin, type I 2.1E-12
Pfam IPR000884 EMBL-EBI Thrombospondin, type I 3.9E-6
Pfam IPR000884 EMBL-EBI Thrombospondin, type I 3.7E-7
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509194.1 1 5-22
NP_509195.1 1 5-22
C36B7.5b 1 5-22
C36B7.5a 1 5-22
Sequence
Target Sequence 
>C. ELEGANS:173918_S_AT
agctcctcaacgtgatcgtacaagttataacagtaacaggagaccttcccattctcgtag
tcaagatgaatacgttcctattgattccgttattggccgtgttcaggtttgtcactggtc
aaaatggtcagagtggagccgatgccacgacaattcaacgcgagagagaaaacggttctg
tgttggagaaaaaggctcagaattagtgagcaattgtgagtgtcttggaaaacctcacga
agaagagccctgcaacgcaactgggttcatagagcagagcaacgaagaaacagacagaga
gattgagaataacttggacaaacttcttgaagaagataatgctggtggagacgtagagct
acacaaaaaaaaagaagaactcaaatccaaagttgagagtgcaattggaactgttcagtg
tgactggacaaggtggtcccagtggagtgtgtgtacggcgtcttgtggcgaaggccgacg
aatgagacgaaggcgctgtccatgcggtgagtcaaagtgtggagctggagttgatgcaga
ttcggagccatgtgtgagcccgccctgccaagctggacactcggaaaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCTCCTCAACGTGATCGTACAAGT 81 81 2749 Antisense
AGTAACAGGAGACCTTCCCATTCTC 163 63 2780 Antisense
TTGATTCCGTTATTGGCCGTGTTCA 301 705 2829 Antisense
GCCGTGTTCAGGTTTGTCACTGGTC 414 283 2844 Antisense
GTCAGAGTGGAGCCGATGCCACGAC 463 465 2875 Antisense
GATGCCACGACAATTCAACGCGAGA 469 415 2889 Antisense
CCCTGCAACGCAACTGGGTTCATAG 27 259 2996 Antisense
GGTCCCAGTGGAGTGTGTGTACGGC 235 503 3183 Antisense
TGTACGGCGTCTTGTGGCGAAGGCC 101 555 3200 Antisense
ATGAGACGAAGGCGCTGTCCATGCG 73 47 3230 Antisense
CTGCCAAGCTGGACACTCGGAAAGA 91 237 3313 Antisense
Sequence Source Affymetrix Proprietary Database