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[173916_at] Activin types I and II receptor domain

Description C61671 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F55D12.5 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C61671 /WB_GENE_ID=F55D12.5 /WP=CE05958 /CHR=1 /FEA=Genomic Cluster /DEF=Activin types I and II receptor domain; C.elegans cDNA clone yk244b7 : 5prime end, single read.
Cluster 6grp_high1_10_10 > 68      4grp_high_8_8 > 03      6grp_total > 69      4grp_total > 0      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 114
(0.2)
P 		101.5
(-3)
M 		122.1
(2.3)
P 		124.7
(3)
P 		23
B 79.3
(-3)
M 		85.1
(-2.5)
P 		105.6
(-0.8)
P 		149.9
(3)
P 		71
C 121
(0.3)
P 		97.6
(-3)
P 		109.9
(-1.2)
P 		139.6
(3)
P 		42
avr 104.8
(-1.6) 		94.7
(-3) 		112.5
(-0.5) 		138.1
(3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 248
1 2 3 4 5 6 range
A 152.1
(-0.8)
P 		116.4
(-1.7)
P 		65.8
(-3)
P 		93.6
(-2.3)
P 		140.1
(-1.1)
P 		299.2
(3)
P 		233
B 110.9
(-1)
P 		117.4
(-0.7)
P 		68.5
(-3)
P 		111.6
(-1)
P 		122.3
(-0.5)
P 		196.9
(3)
P 		128
C 120.9
(0.1)
P 		163.8
(2.1)
P 		94.4
(-1.1)
P 		51.2
(-3)
A 		155.4
(1.7)
P 		184.2
(3)
P 		133
avr 128
(-0.9) 		132.5
(-0.8) 		76.2
(-3) 		85.5
(-2.6) 		139.3
(-0.5) 		226.8
(3) 		151
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 41.5
(3)
P 		22
(-2)
M 		31.9
(0.5)
P 		18.3
(-3)
P 		23
B 25.3
(-0.6)
M 		21
(-3)
P 		24.5
(-1.1)
P 		31.9
(3)
P 		11
C 40.1
(3)
P 		28
(-1.4)
P 		38.3
(2.3)
P 		23.5
(-3)
P 		17
avr 35.6
(3) 		23.7
(-3) 		31.6
(1) 		24.6
(-2.5) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 28
(-1.6)
P 		41.4
(-0.2)
P 		14.3
(-3)
P 		23.7
(-2)
P 		42.3
(-0.1)
P 		72.9
(3)
P 		59
B 38.6
(-0.7)
P 		39.1
(-0.6)
P 		16.6
(-3)
P 		29.6
(-1.6)
P 		49.7
(0.5)
P 		73.4
(3)
P 		57
C 44.8
(1)
P 		50
(1.6)
P 		24
(-1.4)
P 		10.3
(-3)
A 		50.3
(1.7)
P 		61.7
(3)
P 		51
avr 37.1
(-0.8) 		43.5
(-0) 		18.3
(-3) 		21.2
(-2.7) 		47.4
(0.4) 		69.3
(3) 		51
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173916_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.23100
Sequence Type Exemplar sequence
Representative Public ID C61671 NCBI
Target Description C61671 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F55D12.5 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C61671 /WB_GENE_ID=F55D12.5 /WP=CE05958 /CHR=1 /FEA=Genomic Cluster /DEF=Activin types I and II receptor domain; C.elegans cDNA clone yk244b7 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059782(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059782 NCBI Caenorhabditis elegans F55D12.5 (F55D12.5) mRNA, complete cds. 11/11 None
F55D12.5 ENSEMBL cdna:known chromosome:CEL140:I:7914952:7922242:-1 gene:F55D12.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7914954-7921995(-) 85.15 99.64
Public Domain and Genome References
Gene Title Activin types I and II receptor domain
Ensembl F55D12.5
Entrez Gene 3565799 Entrez gene
SwissProt Q19659 EMBL-EBI
WormBase CE36387 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4675 transmembrane receptor protein serine/threonine kinase activity inferred from electronic annotation QuickGO AmiGO
5024 transforming growth factor beta receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA99864 Hypothetical protein F55D12.5 [Caenorhabditis elegans] emb|CAA99842.3| Hypothetical protein F55D12.5 [Caenorhabditis elegans] ref|NP_492183.2| F55D12.5 [Caenorhabditis elegans] 1.0E-180
blast CAE63722 Hypothetical protein CBG08247 [Caenorhabditis briggsae] 7.0E-40
Protein Domains
Database ID Description E-Value
Pfam IPR000472 EMBL-EBI TGF-beta receptor/activin receptor, type I/II 6.6E-25
Sequence
Target Sequence 
>C. ELEGANS:173916_AT
tgttcttgttgtaaaccggtcacacaatcttcccccactcgcaaaattcctaagtttaat
tcgttttttagatttttaataataatttgtttgttactttctttcacttctttttcctaa
tttttttgtgattttctagtccccagttcacaccatcgctctccaaccaggttcatttta
ccgaatgatgagttctcttttcaaattgctttatctccttaccac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTTCTTGTTGTAAACCGGTCACAC 485 559 1956 Antisense
TGTAAACCGGTCACACAATCTTCCC 547 557 1965 Antisense
CACTCGCAAAATTCCTAAGTTTAAT 419 197 1991 Antisense
TGTGATTTTCTAGTCCCCAGTTCAC 447 555 2082 Antisense
TCGCTCTCCAACCAGGTTCATTTTA 521 597 2111 Antisense
CTCTCCAACCAGGTTCATTTTACCG 564 229 2114 Antisense
CCAACCAGGTTCATTTTACCGAATG 204 265 2118 Antisense
TTTACCGAATGATGAGTTCTCTTTT 278 671 2132 Antisense
GAATGATGAGTTCTCTTTTCAAATT 665 331 2138 Antisense
GTTCTCTTTTCAAATTGCTTTATCT 426 443 2147 Antisense
TCAAATTGCTTTATCTCCTTACCAC 218 629 2156 Antisense
Sequence Source Affymetrix Proprietary Database