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[173914_s_at] Yeast YHB3-like protein

Description AV196090 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F21D5.2 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV196090 /WB_GENE_ID=F21D5.2 /WP=CE03245 /CHR=4 /FEA=Genomic Cluster /DEF=Yeast YHB3-like protein; Caenorhabditis elegans cDNA clone:yk649g12 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 56      6grp_high1_10_10 > 65      4grp_highest_8_8 > 35      4grp_high_8_8 > 56      6grp_highest_nonorm > 82      6grp_total > 66      4grp_total > 63      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 143
1 2 3 4 range
A 277
(3)
P 		198.5
(-3)
P 		229.3
(-0.6)
P 		247.6
(0.8)
P 		79
B 227.5
(3)
P 		182.2
(-1.8)
P 		170.5
(-3)
P 		175.4
(-2.5)
P 		57
C 251.7
(2.5)
P 		133.6
(-3)
P 		262.4
(3)
P 		186.5
(-0.5)
P 		129
avr 252.1
(3) 		171.4
(-3) 		220.7
(0.7) 		203.2
(-0.6) 		81

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 438
1 2 3 4 5 6 range
A 341.1
(-0.4)
P 		221.1
(-3)
P 		498.1
(3)
P 		232.5
(-2.8)
P 		302.3
(-1.2)
P 		304.7
(-1.2)
P 		277
B 371.4
(-2.8)
P 		363.7
(-3)
P 		555.6
(0.9)
P 		365.9
(-2.9)
P 		363.3
(-3)
P 		659.3
(3)
P 		296
C 222.1
(-3)
P 		460.5
(1.1)
P 		242.2
(-2.7)
P 		294.6
(-1.8)
P 		274.5
(-2.1)
P 		571.3
(3)
P 		349
avr 311.5
(-2.6) 		348.4
(-1.6) 		432
(0.8) 		297.7
(-3) 		313.4
(-2.6) 		511.8
(3) 		214
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 100.9
(3)
P 		43.1
(-2.4)
P 		59.9
(-0.8)
P 		36.2
(-3)
P 		65
B 72.5
(3)
P 		45
(-1.7)
P 		39.5
(-2.6)
P 		37.4
(-3)
P 		35
C 83.3
(2.2)
P 		38.4
(-2.3)
P 		91.5
(3)
P 		31.4
(-3)
P 		60
avr 85.6
(3) 		42.2
(-2.1) 		63.6
(0.4) 		35
(-3) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 187
1 2 3 4 5 6 range
A 62.9
(-2.5)
P 		78.6
(-0.6)
P 		108.5
(3)
P 		59
(-3)
P 		91.2
(0.9)
P 		74.2
(-1.2)
P 		50
B 129.2
(-1.7)
P 		121.1
(-2)
P 		134.9
(-1.5)
P 		96.9
(-3)
P 		147.6
(-1)
P 		245.9
(3)
P 		149
C 82.3
(-2)
P 		140.5
(0.7)
P 		61.6
(-2.9)
P 		59.2
(-3)
P 		88.8
(-1.7)
P 		191.2
(3)
P 		132
avr 91.5
(-1.8) 		113.4
(-0.5) 		101.7
(-1.2) 		71.7
(-3) 		109.2
(-0.7) 		170.4
(3) 		99
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173914_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.24737
Sequence Type Exemplar sequence
Representative Public ID AV196090 NCBI
Target Description AV196090 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F21D5.2 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV196090 /WB_GENE_ID=F21D5.2 /WP=CE03245 /CHR=4 /FEA=Genomic Cluster /DEF=Yeast YHB3-like protein; Caenorhabditis elegans cDNA clone:yk649g12 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069100(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069100 NCBI Caenorhabditis elegans F21D5.2 (F21D5.2) mRNA, complete cds. 11/11 None
SNAP00000028037 ENSEMBL cdna:SNAP chromosome:CEL140:IV:8728460:8730142:1 11/11 None
GENEFINDER00000028049 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:8728190:8730142:1 11/11 None
F21D5.2.1 ENSEMBL cdna:known chromosome:CEL140:IV:8728121:8730492:1 gene:F21D5.2 11/11 None
F21D5.2.2 ENSEMBL cdna:known chromosome:CEL140:IV:8728159:8730476:1 gene:F21D5.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8728196-8730149(+) 100.0 100.0
Public Domain and Genome References
Gene Title Yeast YHB3-like protein
Ensembl F21D5.2
Entrez Gene 177679 Entrez gene
SwissProt Q19681 EMBL-EBI
WormBase CE03245 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:251149_AT OTU-like cysteine protease family protein at
CANINE_2:CFAAFFX.14260.1.S1_S_AT similar to CG7857-PA cfa
DROSOPHILA_2:1631286_AT dm
DROSGENOME1:144154_AT dm
CHICKEN:GGA.16131.1.S1_S_AT OTU domain containing 6B gga
HU35KSUBA:RC_AA449912_AT OTU domain containing 6B hs
U133_X3P:HS.30532.0.S2_3P_AT OTU domain containing 6B hs
HG-U133_PLUS_2:222825_AT OTU domain containing 6B hs
HG-U133B:222825_AT OTU domain containing 6B hs
HG-U95B:44554_R_AT OTU domain containing 6B hs
MG-U74AV2:98135_R_AT OTU domain containing 6B mm
MG-U74CV2:166630_I_AT OTU domain containing 6B mm
MOE430A:1428277_AT OTU domain containing 6B mm
MOUSE430A_2:1428277_AT OTU domain containing 6B mm
MOUSE430_2:1428277_AT OTU domain containing 6B mm
MU19KSUBC:TC39700_AT RIKEN cDNA 2600013N14 gene (2600013N14Rik), mRNA mm
MU19KSUBC:TC39700_G_AT RIKEN cDNA 2600013N14 gene (2600013N14Rik), mRNA mm
Protein Similarities
Method ID Description E-Value
blast CAA91033 Hypothetical protein F21D5.2 [Caenorhabditis elegans] ref|NP_501501.1| F21D5.2 [Caenorhabditis elegans] 1.0E-147
blast CAA91033 Hypothetical protein F21D5.2 [Caenorhabditis elegans] ref|NP_501501.1| F21D5.2 [Caenorhabditis elegans] 1.0E-133
blast CAE70029 Hypothetical protein CBG16450 [Caenorhabditis briggsae] 8.0E-76
blast CAE70029 Hypothetical protein CBG16450 [Caenorhabditis briggsae] 3.0E-65
Protein Domains
Database ID Description E-Value
Pfam IPR003323 EMBL-EBI Ovarian tumour, otubain 4.0E-41
Pfam IPR003323 EMBL-EBI Ovarian tumour, otubain 4.0E-41
Sequence
Target Sequence 
>C. ELEGANS:173914_S_AT
atcgtcgtcggcattctacaaaactgtgaagatttcaaacaaagctgcaaaaaaacaaga
taaaaaaaagaaaaccgctgacaaaatgaaggctgccgaagcagccgataaggaagcggg
aaaaaatcaactttcggatagacaaatggagaaagcagctgttaaagaggtgctcgcaga
agatcacatgaaaatgatcgatattccagcagatggtgattgtatgtacaatgcaatttc
tcatcaacttcaagaagaaggaatcgagatttctgtacgaaaacttcgcaagagatgtgg
tacttatatgcgtgagcacagcgaagattttcggcctttcattgaggatatggcaaatat
ggatagtgattcttcatgggcaacatatctcggtggagttgaaaatgtcgctgaaattgg
tggagtatggggtggagaactcgagttgaaggcgtgttccatgatttttgagaagactat
tgtggtctacaaacaatacggtggccgtcacacaattggcgaggaatactcgagtccaaa
ggatcgagccctccgagttgtcttccttcgacatgcttactcgcttggag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCGTCGTCGGCATTCTACAAAACT 691 33 323 Antisense
ACCGCTGACAAAATGAAGGCTGCCG 662 89 396 Antisense
CTGCCGAAGCAGCCGATAAGGAAGC 237 237 415 Antisense
GATGTGGTACTTATATGCGTGAGCA 115 409 616 Antisense
CGAAGATTTTCGGCCTTTCATTGAG 511 253 644 Antisense
CATGGGCAACATATCTCGGTGGAGT 662 209 697 Antisense
GAAGGCGTGTTCCATGATTTTTGAG 176 333 770 Antisense
GTCTACAAACAATACGGTGGCCGTC 59 367 807 Antisense
GTGGCCGTCACACAATTGGCGAGGA 179 489 823 Antisense
TCGAGTCCAAAGGATCGAGCCCTCC 507 597 852 Antisense
CTTCGACATGCTTACTCGCTTGGAG 205 219 888 Antisense
Sequence Source Affymetrix Proprietary Database