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[173913_s_at] Hypothetical protein 186 (T. acidophilum)

Description C47182 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=ZK632.3 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C47182 /WB_GENE_ID=ZK632.3 /WP=CE00420 /CHR=3 /FEA=Genomic Cluster /DEF=Hypothetical protein 186 (T. acidophilum); C.elegans cDNA clone yk433e9 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 11      6grp_high1_10_10 > 0      4grp_highest_8_8 > 30      4grp_high_8_8 > 04      6grp_highest_nonorm > 67      6grp_total > 14      4grp_total > 05      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2520
1 2 3 4 range
A 2024.5
(0.1)
P 		1189.8
(-3)
P 		1275.1
(-2.7)
P 		2806.7
(3)
P 		1617
B 1729.7
(-1.7)
P 		1213.5
(-3)
P 		1331.7
(-2.7)
P 		3657.7
(3)
P 		2444
C 1763.5
(-1.1)
P 		1138
(-3)
P 		1426.6
(-2.1)
P 		3087.3
(3)
P 		1949
avr 1839.2
(-1) 		1180.4
(-3) 		1344.5
(-2.5) 		3183.9
(3) 		2004

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 906
1 2 3 4 5 6 range
A 2088.6
(3)
P 		1824.4
(0.3)
P 		1539
(-2.7)
P 		1737.8
(-0.6)
P 		1605
(-2)
P 		1511.4
(-3)
P 		577
B 2158.9
(3)
P 		1981.6
(1.4)
P 		1835.5
(0.2)
P 		1699.8
(-1)
P 		1475.9
(-3)
P 		1593.3
(-2)
P 		683
C 1885
(0.8)
P 		1849.4
(0.5)
P 		1558.2
(-1.4)
P 		2220.5
(3)
P 		1314.3
(-3)
P 		1508.5
(-1.7)
P 		906
avr 2044.2
(3) 		1885.1
(1.4) 		1644.2
(-1.1) 		1886
(1.4) 		1465.1
(-3) 		1537.7
(-2.2) 		579
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 521
1 2 3 4 range
A 737.1
(3)
P 		258.3
(-3)
P 		333.3
(-2.1)
P 		410.8
(-1.1)
P 		479
B 551.6
(0.2)
P 		299.7
(-3)
P 		308.6
(-2.9)
P 		779.5
(3)
P 		480
C 583.8
(3)
P 		327.2
(-3)
P 		497.2
(1)
P 		520.6
(1.5)
P 		257
avr 624.2
(3) 		295.1
(-3) 		379.7
(-1.5) 		570.3
(2) 		329

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 416
1 2 3 4 5 6 range
A 385
(-2)
P 		648.8
(3)
P 		335.2
(-3)
P 		440.8
(-1)
P 		484.3
(-0.1)
P 		368
(-2.4)
P 		314
B 751.2
(3)
P 		659.6
(1.2)
P 		445.7
(-3)
P 		450.2
(-2.9)
P 		599.6
(0)
P 		594.1
(-0.1)
P 		306
C 698.7
(3)
P 		564.3
(0.3)
P 		396.6
(-3)
P 		446.6
(-2)
P 		425.3
(-2.4)
P 		505
(-0.8)
P 		302
avr 611.6
(2.7) 		624.2
(3) 		392.5
(-3) 		445.9
(-1.6) 		503.1
(-0.1) 		489
(-0.5) 		232
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173913_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.24312
Sequence Type Exemplar sequence
Representative Public ID C47182 NCBI
Target Description C47182 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=ZK632.3 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C47182 /WB_GENE_ID=ZK632.3 /WP=CE00420 /CHR=3 /FEA=Genomic Cluster /DEF=Hypothetical protein 186 (T. acidophilum); C.elegans cDNA clone yk433e9 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066772(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066772 NCBI Caenorhabditis elegans ZK632.3 (ZK632.3) mRNA, complete cds. 11/11 None
GENEFINDER00000031487 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9802264:9804865:-1 11/11 None
SNAP00000031472 ENSEMBL cdna:SNAP chromosome:CEL140:III:9802358:9804865:-1 10/11 None
ZK632.3 ENSEMBL cdna:known chromosome:CEL140:III:9802269:9804905:-1 gene:ZK632.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9802316-9804862(-) 97.69 100.0
Public Domain and Genome References
Gene Title Hypothetical protein 186 (T. acidophilum)
Ensembl ZK632.3
Entrez Gene 176387 Entrez gene
SwissProt P34649 EMBL-EBI
WormBase CE00420 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.27871.1.S1_S_AT similar to sudD suppressor of bimD6 homolog isoform 2 cfa
DROSOPHILA_2:1633622_AT dm
DROSGENOME1:145788_AT dm
CHICKEN:GGA.13253.1.S1_AT similar to sudD suppressor of bimD6 homolog isoform 1; homolog of the Aspergillus nidulans sudD gene product; sudD suppressor of Aspergillus nidulans bimD6 homolog; sudD suppressor of bimD6 homolog (A. nidulans); sudD (suppressor of bimD6, Aspergil... gga
CHICKEN:GGAAFFX.24567.1.S1_AT similar to sudD suppressor of bimD6 homolog isoform 1; homolog of the Aspergillus nidulans sudD gene product; sudD suppressor of Aspergillus nidulans bimD6 homolog; sudD suppressor of bimD6 homolog (A. nidulans); sudD (suppressor of bimD6, Aspergil... gga
PLASMODIUM_ANOPHELES:202129_S_AT RIO kinase 3 (yeast) hs
HG-U133A_2:202129_S_AT RIO kinase 3 (yeast) hs
HG-U133_PLUS_2:202129_S_AT RIO kinase 3 (yeast) hs
HG-U133A:202129_S_AT RIO kinase 3 (yeast) hs
PLASMODIUM_ANOPHELES:202130_AT RIO kinase 3 (yeast) hs
HG-U133A_2:202130_AT RIO kinase 3 (yeast) hs
HG-FOCUS:202130_AT RIO kinase 3 (yeast) hs
HG-U133_PLUS_2:202130_AT RIO kinase 3 (yeast) hs
HG-U133A:202130_AT RIO kinase 3 (yeast) hs
PLASMODIUM_ANOPHELES:202131_S_AT RIO kinase 3 (yeast) hs
HG-U133A:202131_S_AT RIO kinase 3 (yeast) hs
HG-U133_PLUS_2:202131_S_AT RIO kinase 3 (yeast) hs
HG-U133A_2:202131_S_AT RIO kinase 3 (yeast) hs
HG-U95AV2:32834_R_AT RIO kinase 3 (yeast) hs
HU35KSUBA:W56214_AT RIO kinase 3 (yeast) hs
HU35KSUBA:N91292_AT RIO kinase 3 (yeast) hs
HU35KSUBA:AA343881_AT RIO kinase 3 (yeast) hs
HU35KSUBD:RC_AA399691_AT RIO kinase 3 (yeast) hs
HU35KSUBD:RC_N68449_AT RIO kinase 3 (yeast) hs
U133_X3P:G4507298_3P_X_AT RIO kinase 3 (yeast) hs
U133_X3P:G4507298_3P_A_AT RIO kinase 3 (yeast) hs
U133_X3P:HS.287658.0.S1_3P_X_AT RIO kinase 3 (yeast) hs
U133_X3P:HS.209061.0.S3_3P_AT RIO kinase 3 (yeast) hs
U133_X3P:HS.209061.0.S1_3P_A_AT RIO kinase 3 (yeast) hs
U133_X3P:HS.143933.0.A1_3P_AT RIO kinase 3 (yeast) hs
U133_X3P:202131_3P_S_AT RIO kinase 3 (yeast) hs
HG-U133A_2:215588_X_AT RIO kinase 3 (yeast) hs
HG-U133_PLUS_2:215588_X_AT RIO kinase 3 (yeast) hs
HG-U133A:215588_X_AT RIO kinase 3 (yeast) hs
HG-U133_PLUS_2:240583_AT RIO kinase 3 (yeast) hs
HG-U133B:240583_AT RIO kinase 3 (yeast) hs
HG-U95AV2:32835_AT RIO kinase 3 (yeast) hs
HG-U95D:79638_AT RIO kinase 3 (yeast) hs
HU35KSUBC:RC_AA450065_AT RIO kinase 3 (yeast) hs
HG-U95C:60122_R_AT RIO kinase 3 (yeast) hs
HU35KSUBB:RC_R92778_AT RIO kinase 3 (yeast) hs
MU11KSUBA:AA186025_S_AT RIO kinase 3 (yeast) mm
MG-U74AV2:161551_F_AT RIO kinase 3 (yeast) mm
MG-U74AV2:160301_AT RIO kinase 3 (yeast) mm
MOE430A:1460670_AT RIO kinase 3 (yeast) mm
MOUSE430A_2:1460670_AT RIO kinase 3 (yeast) mm
MOUSE430_2:1460670_AT RIO kinase 3 (yeast) mm
MOE430A:1415747_S_AT RIO kinase 3 (yeast) mm
MOE430B:1415747_S_AT RIO kinase 3 (yeast) mm
MOUSE430A_2:1415747_S_AT RIO kinase 3 (yeast) mm
MOUSE430_2:1415747_S_AT RIO kinase 3 (yeast) mm
MOE430A:1422650_A_AT RIO kinase 3 (yeast) mm
MOUSE430A_2:1422650_A_AT RIO kinase 3 (yeast) mm
MOUSE430_2:1422650_A_AT RIO kinase 3 (yeast) mm
MG-U74BV2:109505_AT RIO kinase 3 (yeast) mm
MG-U74CV2:135652_AT RIO kinase 3 (yeast), mRNA (cDNA clone MGC:25438 IMAGE:4016197) mm
MOE430A:1419981_AT RIO kinase 3 (yeast), mRNA (cDNA clone MGC:25438 IMAGE:4016197) mm
MOUSE430A_2:1419981_AT RIO kinase 3 (yeast), mRNA (cDNA clone MGC:25438 IMAGE:4016197) mm
MOUSE430_2:1419981_AT RIO kinase 3 (yeast), mRNA (cDNA clone MGC:25438 IMAGE:4016197) mm
MU19KSUBA:TC19849_AT RIO kinase 3 (yeast), mRNA (cDNA clone MGC:25438 IMAGE:4016197) mm
MU19KSUBA:TC19849_G_AT RIO kinase 3 (yeast), mRNA (cDNA clone MGC:25438 IMAGE:4016197) mm
MU19KSUBC:TC38404_AT RIO kinase 3 (yeast), mRNA (cDNA clone MGC:25438 IMAGE:4016197) mm
RAE230B:1395699_AT RIO kinase 3 (yeast) (predicted) rn
RAT230_2:1395699_AT RIO kinase 3 (yeast) (predicted) rn
RAE230B:1394363_AT RIO kinase 3 (yeast) (predicted) rn
RAT230_2:1394363_AT RIO kinase 3 (yeast) (predicted) rn
RAE230A:1390047_AT RIO kinase 3 (yeast) (predicted) rn
RAT230_2:1390047_AT RIO kinase 3 (yeast) (predicted) rn
RAE230B:1393236_AT RIO kinase 3 (yeast) (predicted) rn
RAT230_2:1393236_AT RIO kinase 3 (yeast) (predicted) rn
RG-U34B:RC_AA957463_AT RIO kinase 3 (yeast) (predicted) rn
RG-U34C:RC_AI103374_AT RIO kinase 3 (yeast) (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4713 protein-tyrosine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA80180 Hypothetical protein ZK632.3 [Caenorhabditis elegans] ref|NP_499173.1| ZK632.3 [Caenorhabditis elegans] sp|P34649|YOT3_CAEEL Putative RIO-type serine/threonine-protein kinase ZK632.3 0.0
blast CAE65126 Hypothetical protein CBG09991 [Caenorhabditis briggsae] 0.0
blast AAH75585 MGC89575 protein [Xenopus tropicalis] ref|NP_001004996.1| MGC89575 protein [Xenopus tropicalis] 2.0E-73
Protein Domains
Database ID Description E-Value
Pfam IPR000687 EMBL-EBI Protein of unknown function RIO1 6.4E-104
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000031487 1 513-535
Sequence
Target Sequence 
>C. ELEGANS:173913_S_AT
gtgtccacaacctgtcaaagttcgtcgcaatgttcttgtcatgtcatttctcggagatca
aggtcttgccgcaccaagactcaaaaacgtggaatgggaatttttcactgacgatgagcg
cagaaatgtttacgatcaagtacaatcgataatgtgtcgaatgtacaaagaatgtcttct
ggttcatgcggatctgagcgagttcaatcttctcttaactcctgataataaagttcacgt
gatcgatgtgtctcaagcaatggatctatctcatccacgatcattacaattcctcactcg
tgacattcaaaatattatcacattcttcactcgtatcggaactccaaatcttccaaccta
cgttcaactattcaatctgattactgacctcgatatggtagaagatcatgatttgctcgt
ccaagttgaacaattttccgaagagaatagatccgtagacttacgtcatgataaatctcg
gccagctgatatggagctcaagaaatataatgaagagaagaaagcgaatcgaggcatttc
accggcgagagagta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGTCCACAACCTGTCAAAGTTCGT 333 485 985 Antisense
AGTTCGTCGCAATGTTCTTGTCATG 141 65 1003 Antisense
TTGTCATGTCATTTCTCGGAGATCA 292 707 1020 Antisense
TCGGAGATCAAGGTCTTGCCGCACC 300 607 1035 Antisense
GAATGTCTTCTGGTTCATGCGGATC 602 329 1154 Antisense
TTCAATCTTCTCTTAACTCCTGATA 554 685 1187 Antisense
ATCTATCTCATCCACGATCATTACA 11 33 1248 Antisense
ATCATTACAATTCCTCACTCGTGAC 380 31 1264 Antisense
TTCTTCACTCGTATCGGAACTCCAA 194 689 1307 Antisense
AATCTTCCAACCTACGTTCAACTAT 571 169 1331 Antisense
GAGGCATTTCACCGGCGAGAGAGTA 415 405 1515 Antisense
Sequence Source Affymetrix Proprietary Database