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[173912_at] Yeast hypothetical protein YPL247C like

Description C42863 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F53C11.8 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C42863 /WB_GENE_ID=F53C11.8 /WP=CE10918 /CHR=5 /FEA=Genomic Cluster /DEF=Yeast hypothetical protein YPL247C like; C.elegans cDNA clone yk326a5 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 43      6grp_high1_10_10 > 33      4grp_highest_8_8 > 45      4grp_high_8_8 > 09      6grp_highest_nonorm > 75      6grp_total > 11      4grp_total > 23      6grp_highest_sub > 02      6grp_cgc > 53      6grp_high1_sub > 02      6grp_cgc_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 424
1 2 3 4 range
A 1045.5
(3)
P 		905.4
(-3)
P 		979.6
(0.2)
P 		978.3
(0.1)
P 		140
B 1202.4
(3)
P 		914
(-2.8)
P 		903.9
(-3)
P 		1129.3
(1.5)
P 		299
C 979.2
(2.1)
P 		869.7
(-0.7)
P 		778
(-3)
P 		1017
(3)
P 		239
avr 1075.7
(3) 		896.4
(-2.7) 		887.2
(-3) 		1041.5
(1.9) 		189

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 384
1 2 3 4 5 6 range
A 887
(0.9)
P 		1003.5
(3)
P 		675.3
(-3)
P 		827.5
(-0.2)
P 		833.6
(-0.1)
P 		794.4
(-0.8)
P 		328
B 756.6
(-3)
P 		1059.1
(3)
P 		938.3
(0.6)
P 		842.6
(-1.3)
P 		840.5
(-1.3)
P 		821.7
(-1.7)
P 		303
C 794.4
(-1.2)
P 		1059.5
(3)
P 		908.5
(0.6)
P 		886.9
(0.2)
P 		766.9
(-1.7)
P 		683.6
(-3)
P 		376
avr 812.7
(-2) 		1040.7
(3) 		840.7
(-1.4) 		852.3
(-1.1) 		813.7
(-2) 		766.6
(-3) 		274
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 240
1 2 3 4 range
A 380.6
(3)
P 		196.5
(-1.7)
P 		256.1
(-0.1)
P 		143.2
(-3)
P 		237
B 383.4
(3)
P 		225.7
(-2.4)
P 		209.5
(-3)
P 		240.6
(-1.9)
P 		174
C 324.1
(3)
P 		250.1
(0.1)
P 		271.2
(0.9)
P 		171.5
(-3)
P 		153
avr 362.7
(3) 		224.1
(-1.7) 		245.6
(-1) 		185.1
(-3) 		178

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 210
1 2 3 4 5 6 range
A 163.5
(-2.5)
P 		356.9
(3)
P 		147.1
(-3)
P 		209.9
(-1.2)
P 		251.6
(-0)
P 		193.4
(-1.7)
P 		210
B 263.3
(-1.1)
P 		352.5
(3)
P 		227.8
(-2.8)
P 		223.2
(-3)
P 		341.5
(2.5)
P 		306.4
(0.9)
P 		129
C 294.5
(1.8)
P 		323.3
(3)
P 		231.2
(-0.8)
P 		178.4
(-3)
P 		248.2
(-0.1)
P 		228.9
(-0.9)
P 		145
avr 240.4
(-1.4) 		344.2
(3) 		202
(-3) 		203.8
(-2.9) 		280.4
(0.3) 		242.9
(-1.3) 		142
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173912_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25543
Sequence Type Exemplar sequence
Representative Public ID C42863 NCBI
Target Description C42863 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F53C11.8 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C42863 /WB_GENE_ID=F53C11.8 /WP=CE10918 /CHR=5 /FEA=Genomic Cluster /DEF=Yeast hypothetical protein YPL247C like; C.elegans cDNA clone yk326a5 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074017(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074017 NCBI Caenorhabditis elegans F53C11.8 (F53C11.8) mRNA, complete cds. 11/11 None
F53C11.8.2 ENSEMBL cdna:known chromosome:CEL140:V:13806984:13809828:-1 gene:F53C11.8 11/11 None
F53C11.8.1 ENSEMBL cdna:known chromosome:CEL140:V:13806984:13809826:-1 gene:F53C11.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13807016-13809801(-) 98.13 100.0
Public Domain and Genome References
Gene Title Yeast hypothetical protein YPL247C like
Gene Symbol swan-1
Ensembl F53C11.8
Entrez Gene 179876 Entrez gene
SwissProt Q93758 EMBL-EBI
WormBase CE10918 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02115 Hypothetical protein F53C11.8 [Caenorhabditis elegans] ref|NP_506418.1| F53C11.8 [Caenorhabditis elegans] 0.0
blast CAE66235 Hypothetical protein CBG11479 [Caenorhabditis briggsae] 1.0E-173
blast XP_395370 PREDICTED: similar to ENSANGP00000019078 [Apis mellifera] 1.0E-102
Protein Domains
Database ID Description E-Value
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.8E-5
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 2.0E-9
Sequence
Target Sequence 
>C. ELEGANS:173912_AT
agaggatgtgcgttctgtttgagaactaacaaaaatttctcacatttctcaattaacgtt
attttccatttcctgttatgtttttatgtttttaaattataattttttgtcaattgctct
gatttcaagtcactttctccgcctttgttgtgaacaacttatttgaattaattccaaagc
atcagtatgatgattcacgatctctttcaaacctcaattttctcacgccaacacacaatt
gttttatccacccgaaaattattgttttatatcctatttttttccat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAGGATGTGCGTTCTGTTTGAGAA 49 69 1183 Antisense
ATTTCTCACATTTCTCAATTAACGT 64 17 1217 Antisense
ACGTTATTTTCCATTTCCTGTTATG 219 95 1238 Antisense
GTCAATTGCTCTGATTTCAAGTCAC 567 463 1291 Antisense
TCTGATTTCAAGTCACTTTCTCCGC 399 607 1300 Antisense
CTTTCTCCGCCTTTGTTGTGAACAA 317 223 1315 Antisense
GATGATTCACGATCTCTTTCAAACC 129 411 1371 Antisense
CTTTCAAACCTCAATTTTCTCACGC 88 223 1386 Antisense
ATTTTCTCACGCCAACACACAATTG 228 15 1399 Antisense
CACACAATTGTTTTATCCACCCGAA 11 195 1414 Antisense
TGTTTTATATCCTATTTTTTTCCAT 302 561 1445 Antisense
Sequence Source Affymetrix Proprietary Database