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[173911_s_at] acyl-coenzyme A oxidase

Description AV186784 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F58F9.7 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV186784 /WB_GENE_ID=F58F9.7 /WP=CE07304 /CHR=4 /FEA=Genomic Cluster /DEF=acyl-coenzyme A oxidase; Caenorhabditis elegans cDNA clone:yk504b11 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 75      6grp_high1_10_10 > 57      4grp_highest_8_8 > 20      4grp_high_8_8 > 31      6grp_highest_nonorm > 48      6grp_total > 58      4grp_total > 24      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3242
1 2 3 4 range
A 4045.7
(-3)
P 		5273.9
(0.3)
P 		6068.7
(2.4)
P 		6274.1
(3)
P 		2228
B 4045.9
(-2.5)
P 		3759.2
(-3)
P 		6230.7
(1.6)
P 		6989.6
(3)
P 		3230
C 4003.3
(-2.5)
P 		3747.2
(-3)
P 		6571.2
(2.4)
P 		6892.3
(3)
P 		3145
avr 4031.6
(-3) 		4260.1
(-2.5) 		6290.2
(2) 		6718.7
(3) 		2687

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5925
1 2 3 4 5 6 range
A 5601
(0.5)
P 		3212.9
(-2.1)
P 		2630.6
(-2.8)
P 		3001.3
(-2.4)
P 		2441.9
(-3)
P 		7847.7
(3)
P 		5406
B 4957.2
(0.1)
P 		2648.9
(-2.8)
P 		2845.2
(-2.5)
P 		2735.9
(-2.6)
P 		2448.6
(-3)
P 		7303.1
(3)
P 		4855
C 5043
(-0.3)
P 		2618.3
(-2.7)
P 		3735.8
(-1.6)
P 		3593.3
(-1.7)
P 		2336.4
(-3)
P 		8261.3
(3)
P 		5925
avr 5200.4
(0.1) 		2826.7
(-2.5) 		3070.5
(-2.3) 		3110.2
(-2.2) 		2409
(-3) 		7804
(3) 		5395
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1372
1 2 3 4 range
A 1473
(2)
P 		1144.8
(-1)
P 		1586.5
(3)
P 		918.4
(-3)
P 		668
B 1290.2
(0.9)
P 		928.4
(-3)
P 		1443.8
(2.5)
P 		1489.5
(3)
P 		561
C 1325.2
(-1.8)
P 		1077.3
(-3)
P 		2290.3
(3)
P 		1162.1
(-2.6)
P 		1213
avr 1362.8
(-0.4) 		1050.2
(-3) 		1773.5
(3) 		1190
(-1.8) 		723

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2193
1 2 3 4 5 6 range
A 1032.5
(-0.9)
P 		1142.7
(-0.4)
P 		572.9
(-3)
P 		761.2
(-2.2)
P 		736.9
(-2.3)
P 		1910.7
(3)
P 		1338
B 1724.9
(0.1)
P 		881.7
(-2.4)
P 		690.9
(-3)
P 		724.7
(-2.9)
P 		994.8
(-2.1)
P 		2723.3
(3)
P 		2032
C 1869.2
(0.4)
P 		798.9
(-2.8)
P 		950.8
(-2.3)
P 		722.6
(-3)
P 		756
(-2.9)
P 		2765.5
(3)
P 		2043
avr 1542.2
(-0.2) 		941.1
(-2.3) 		738.2
(-3) 		736.2
(-3) 		829.2
(-2.7) 		2466.5
(3) 		1730
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173911_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.24873
Sequence Type Exemplar sequence
Representative Public ID AV186784 NCBI
Target Description AV186784 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F58F9.7 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV186784 /WB_GENE_ID=F58F9.7 /WP=CE07304 /CHR=4 /FEA=Genomic Cluster /DEF=acyl-coenzyme A oxidase; Caenorhabditis elegans cDNA clone:yk504b11 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068542(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068542 NCBI Caenorhabditis elegans F58F9.7 (F58F9.7) mRNA, complete cds. 11/11 None
SNAP00000041830 ENSEMBL cdna:SNAP chromosome:CEL140:IV:6245383:6248463:-1 11/11 None
GENEFINDER00000041835 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:6245383:6248463:-1 11/11 None
F58F9.7.1 ENSEMBL cdna:known chromosome:CEL140:IV:6245325:6248476:-1 gene:F58F9.7 11/11 None
F58F9.7.2 ENSEMBL cdna:known chromosome:CEL140:IV:6245383:6248470:-1 gene:F58F9.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6245389-6248470(-) 100.0 100.0
Public Domain and Genome References
Gene Title acyl-coenzyme A oxidase
Ensembl F58F9.7
Entrez Gene 177386 Entrez gene
SwissProt Q20992 EMBL-EBI
WormBase CE07304 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:260789_S_AT acyl-CoA oxidase (ACX3) at
CANINE_2:CFAAFFX.22434.1.S1_AT similar to Acyl-coenzyme A oxidase 3, peroxisomal (Pristanoyl-CoA oxidase) cfa
CANINE_2:CFAAFFX.22437.1.S1_AT similar to Acyl-coenzyme A oxidase 3, peroxisomal (Pristanoyl-CoA oxidase) cfa
CANINE_2:CFAAFFX.22437.1.S1_S_AT similar to Acyl-coenzyme A oxidase 3, peroxisomal (Pristanoyl-CoA oxidase) cfa
DROSOPHILA_2:1623069_S_AT dm
DROSGENOME1:141646_AT dm
CHICKEN:GGAAFFX.9942.1.S1_AT similar to Zgc:64087 gga
CHICKEN:GGAAFFX.9942.3.S1_S_AT similar to Zgc:64087 gga
HG-U133_PLUS_2:204242_S_AT acyl-Coenzyme A oxidase 3, pristanoyl hs
HG-U133A:204242_S_AT acyl-Coenzyme A oxidase 3, pristanoyl hs
HG-U133A_2:204242_S_AT acyl-Coenzyme A oxidase 3, pristanoyl hs
U133_X3P:G4501870_3P_A_AT acyl-Coenzyme A oxidase 3, pristanoyl hs
HG-U133A_2:204241_AT acyl-Coenzyme A oxidase 3, pristanoyl hs
HG-FOCUS:204241_AT acyl-Coenzyme A oxidase 3, pristanoyl hs
HG-U133_PLUS_2:204241_AT acyl-Coenzyme A oxidase 3, pristanoyl hs
HG-U133A:204241_AT acyl-Coenzyme A oxidase 3, pristanoyl hs
HG-U95AV2:41697_AT acyl-Coenzyme A oxidase 3, pristanoyl hs
HG-U95D:89887_S_AT acyl-Coenzyme A oxidase 3, pristanoyl hs
HG-U95D:89889_I_AT acyl-Coenzyme A oxidase 3, pristanoyl hs
HG-U133_PLUS_2:243817_AT Acyl-Coenzyme A oxidase 3, pristanoyl hs
HG-U133B:243817_AT Acyl-Coenzyme A oxidase 3, pristanoyl hs
HG-U95E:68160_AT Acyl-Coenzyme A oxidase 3, pristanoyl hs
HG-U95D:89027_AT Acyl-Coenzyme A oxidase 3, pristanoyl hs
HU35KSUBA:RC_AA452552_AT Acyl-Coenzyme A oxidase 3, pristanoyl hs
U133_X3P:HS.190060.0.A1_3P_AT Acyl-Coenzyme A oxidase 3, pristanoyl hs
MG-U74CV2:167935_I_AT acyl-Coenzyme A oxidase 3, pristanoyl mm
MG-U74CV2:167058_AT acyl-Coenzyme A oxidase 3, pristanoyl mm
MOE430A:1420684_AT acyl-Coenzyme A oxidase 3, pristanoyl mm
MOUSE430A_2:1420684_AT acyl-Coenzyme A oxidase 3, pristanoyl mm
MOUSE430_2:1420684_AT acyl-Coenzyme A oxidase 3, pristanoyl mm
MOE430B:1437352_AT acyl-Coenzyme A oxidase 3, pristanoyl mm
MOUSE430_2:1437352_AT acyl-Coenzyme A oxidase 3, pristanoyl mm
RG-U34A:X95188_AT acyl-Coenzyme A oxidase 3, pristanoyl rn
RAE230A:1369734_AT acyl-Coenzyme A oxidase 3, pristanoyl rn
RAT230_2:1369734_AT acyl-Coenzyme A oxidase 3, pristanoyl rn
RAE230B:1377887_AT Acyl-Coenzyme A oxidase 3, pristanoyl rn
RAT230_2:1377887_AT Acyl-Coenzyme A oxidase 3, pristanoyl rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
6635 fatty acid beta-oxidation inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5777 peroxisome inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3997 acyl-CoA oxidase activity inferred from electronic annotation QuickGO AmiGO
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC48086 Hypothetical protein F58F9.7 [Caenorhabditis elegans] ref|NP_500943.1| F58F9.7 [Caenorhabditis elegans] 0.0
blast CAE61577 Hypothetical protein CBG05491 [Caenorhabditis briggsae] 0.0
Protein Families
Method ID Description E-Value
ec ACDM_DROME (Q9VSA3) Probable acyl-CoA dehydrogenase, medium-chain specific, mitochondrial precursor (EC 1.3.99.3) (MCAD) 2.0E-77
Protein Domains
Database ID Description E-Value
Pfam IPR002655 EMBL-EBI Acyl-CoA oxidase 5.4E-55
Pfam IPR002655 EMBL-EBI Acyl-CoA oxidase 5.4E-55
Sequence
Target Sequence 
>C. ELEGANS:173911_S_AT
gaccccgatgtctactatgtcattcttgaatcaaaaaccttcaaagttctcatcatggtc
ttcgaatccagttaatgacgtgttgtctgcgtaccgatatctcacttatcacttacttca
aacaacttcggcagaagcttacagactaaaagcatctggaaagaattcattcgaagttcg
aaatgaaattcaaattcatagagctgtcaatttgtctgttgcatacacagaacatacaat
gatccattgggttcaacagttcttgaaagaaattgaagatcaaagtgtgaagccggttct
tcaaaaagttttgaatcttttctcacttttccttttggaaagacatcttgcaactcttta
tattactggatatgcttctggtggaaagtttggagaagatcttcgagagaagcttagact
cgctgtagccgaattaaaacccgaggccattgctttagtggactcgattgctccagatga
tttcattttacattcagctctgggagcatctgatggaagagcgtacgagcatataatgga
agaattccggaagtatacaaatgaacaaccaagatgggtttgcgatttggctcagtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACCCCGATGTCTACTATGTCATTC 86 383 1387 Antisense
AAAGTTCTCATCATGGTCTTCGAAT 375 121 1429 Antisense
TGTTGTCTGCGTACCGATATCTCAC 541 563 1467 Antisense
ATCTCACTTATCACTTACTTCAAAC 52 33 1485 Antisense
AGAGCTGTCAATTTGTCTGTTGCAT 497 69 1586 Antisense
GACATCTTGCAACTCTTTATATTAC 569 369 1728 Antisense
GAAGCTTAGACTCGCTGTAGCCGAA 209 341 1795 Antisense
AACCCGAGGCCATTGCTTTAGTGGA 282 139 1824 Antisense
CTCGATTGCTCCAGATGATTTCATT 402 233 1849 Antisense
GATTTCATTTTACATTCAGCTCTGG 148 429 1865 Antisense
GATGGGTTTGCGATTTGGCTCAGTT 200 409 1959 Antisense
Sequence Source Affymetrix Proprietary Database