[Home] | [Total List]

[173910_at] protein phosphatase PP2A subunit A repeat

Description C63156 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F46C5.6 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C63156 /WB_GENE_ID=F46C5.6 /WP=CE20811 /CHR=2 /FEA=Genomic Cluster /DEF=protein phosphatase PP2A subunit A repeat; C.elegans cDNA clone yk322e7 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 51      6grp_high1_10_10 > 16      4grp_highest_8_8 > 46      4grp_high_8_8 > 02      6grp_highest_nonorm > 50      6grp_total > 25      4grp_total > 15      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 333
1 2 3 4 range
A 540.3
(3)
P 		352.8
(-3)
P 		407.4
(-1.3)
P 		531.6
(2.7)
P 		188
B 605.4
(2.6)
P 		346.9
(-2.8)
P 		339.2
(-3)
P 		623.4
(3)
P 		284
C 542.2
(1.4)
P 		299.4
(-3)
P 		357.1
(-2)
P 		632.2
(3)
P 		333
avr 562.6
(2.2) 		333
(-3) 		367.9
(-2.2) 		595.7
(3) 		263

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 516
1 2 3 4 5 6 range
A 771.3
(3)
P 		569.9
(-0.1)
P 		440.4
(-2.1)
P 		381.7
(-3)
P 		404.9
(-2.6)
P 		419.2
(-2.4)
P 		390
B 729
(3)
P 		565.4
(0.8)
P 		454
(-0.8)
P 		492
(-0.2)
P 		290.7
(-3)
P 		382.4
(-1.7)
P 		438
C 514.2
(1.4)
P 		609.7
(3)
P 		499.3
(1.1)
P 		440.5
(0.1)
P 		255.2
(-3)
P 		390.7
(-0.7)
P 		355
avr 671.5
(3) 		581.7
(1.5) 		464.6
(-0.5) 		438.1
(-0.9) 		316.9
(-3) 		397.4
(-1.6) 		355
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 120
1 2 3 4 range
A 196.7
(3)
P 		76.6
(-3)
P 		106.5
(-1.5)
P 		77.8
(-2.9)
P 		120
B 193.1
(3)
P 		85.7
(-2.6)
P 		78.6
(-3)
P 		132.9
(-0.2)
P 		115
C 179.5
(3)
P 		86.1
(-3)
P 		124.5
(-0.5)
P 		106.6
(-1.7)
P 		93
avr 189.8
(3) 		82.8
(-3) 		103.2
(-1.9) 		105.8
(-1.7) 		107

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 171
1 2 3 4 5 6 range
A 142.2
(-0.4)
P 		202.7
(3)
P 		95.9
(-3)
P 		96.8
(-2.9)
P 		122.2
(-1.5)
P 		102.1
(-2.7)
P 		107
B 253.6
(3)
P 		188.2
(0.3)
P 		110.2
(-3)
P 		130.3
(-2.2)
P 		118.1
(-2.7)
P 		142.6
(-1.6)
P 		143
C 190.6
(3)
P 		186
(2.7)
P 		127.1
(-0.5)
P 		88.6
(-2.7)
P 		82.6
(-3)
P 		130.8
(-0.3)
P 		108
avr 195.5
(3) 		192.3
(2.8) 		111.1
(-2.6) 		105.2
(-3) 		107.6
(-2.8) 		125.2
(-1.7) 		90
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173910_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.23262
Sequence Type Exemplar sequence
Representative Public ID C63156 NCBI
Target Description C63156 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F46C5.6 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C63156 /WB_GENE_ID=F46C5.6 /WP=CE20811 /CHR=2 /FEA=Genomic Cluster /DEF=protein phosphatase PP2A subunit A repeat; C.elegans cDNA clone yk322e7 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063483(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063483 NCBI Caenorhabditis elegans F46C5.6 (F46C5.6) mRNA, complete cds. 11/11 A 
F46C5.6 ENSEMBL cdna:known chromosome:CEL140:II:8840121:8844613:-1 gene:F46C5.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8840184-8844611(-) 96.61 100.0
Public Domain and Genome References
Gene Title protein phosphatase PP2A subunit A repeat
Ensembl F46C5.6
Entrez Gene 174413 Entrez gene
SwissProt O17873 EMBL-EBI
WormBase CE32892 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.26993.1.S1_AT similar to HEAT-like repeat-containing protein isoform 1 cfa
CHICKEN:GGAAFFX.6926.1.S1_AT similar to HEAT-like repeat-containing protein isoform 1; HEAT-like repeat-containing protein; MGC4163 protein gga
HG-U133_PLUS_2:233002_AT KIAA1622 hs
HG-U133B:233002_AT KIAA1622 hs
HG-U133_PLUS_2:220673_S_AT KIAA1622 hs
HG-U133A:220673_S_AT KIAA1622 hs
HG-U133A_2:220673_S_AT KIAA1622 hs
HG-U133_PLUS_2:220672_AT KIAA1622 hs
HG-U133A:220672_AT KIAA1622 hs
HG-U133A_2:220672_AT KIAA1622 hs
U133_X3P:G13124766_3P_AT KIAA1622 hs
U133_X3P:HS.259599.1.S1_3P_AT KIAA1622 hs
MOE430B:1443851_AT RIKEN cDNA 8430415E04 gene mm
MOUSE430_2:1443851_AT RIKEN cDNA 8430415E04 gene mm
Protein Similarities
Method ID Description E-Value
blast CAB03367 Hypothetical protein F46C5.6 [Caenorhabditis elegans] emb|CAA91051.2| Hypothetical protein F46C5.6 [Caenorhabditis elegans] ref|NP_495884.2| F46C5.6 [Caenorhabditis elegans] 0.0
blast CAE59749 Hypothetical protein CBG03194 [Caenorhabditis briggsae] 0.0
blast XP_393531 PREDICTED: similar to HEAT-like repeat-containing protein [Apis mellifera] 1.0E-58
Protein Domains
Database ID Description E-Value
Pfam IPR000357 EMBL-EBI HEAT 1.9E-10
Pfam IPR000357 EMBL-EBI HEAT 4.5E-8
Sequence
Target Sequence 
>C. ELEGANS:173910_AT
ctgatgcgatgacatcttccacatcatcaatttcatcaaatagtttcacatcaccactaa
gttcatcatctctaccatcgtcaggatatggtctccgtagatcggcaacttccagtagtg
catttgctggatcttcgtacacctcaacgtcttcatattcattgatgaatgcccgttcat
cttcaaatattcgtcgccctggatatggactttcacatgtttcaagccttagcaccttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTGATGCGATGACATCTTCCACATC 448 239 2560 Antisense
CTTCCACATCATCAATTTCATCAAA 397 219 2575 Antisense
TCACCACTAAGTTCATCATCTCTAC 200 625 2610 Antisense
CATCATCTCTACCATCGTCAGGATA 500 213 2623 Antisense
CAGGATATGGTCTCCGTAGATCGGC 25 205 2641 Antisense
AGATCGGCAACTTCCAGTAGTGCAT 508 65 2658 Antisense
TGCATTTGCTGGATCTTCGTACACC 224 577 2678 Antisense
TACACCTCAACGTCTTCATATTCAT 434 643 2697 Antisense
GCCCGTTCATCTTCAAATATTCGTC 27 287 2730 Antisense
TTCGTCGCCCTGGATATGGACTTTC 333 693 2749 Antisense
ACATGTTTCAAGCCTTAGCACCTTT 420 105 2774 Antisense
Sequence Source Affymetrix Proprietary Database