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[173905_s_at] UDP galactosyltransferase

Description AU109732 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=B0310.5 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AU109732 /WB_GENE_ID=B0310.5 /WP=CE03878 /CHR=X /FEA=Genomic Cluster /DEF=UDP galactosyltransferase; Caenorhabditis elegans cDNA clone:yk710e8 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 44      6grp_high1_10_10 > 43      4grp_highest_8_8 > 12      4grp_high_8_8 > 31      6grp_highest_nonorm > 42      6grp_total > 20      4grp_total > 32      6grp_highest_sub > 02      6grp_cgc > 72      6grp_high1_sub > 02      6grp_cgc_sub > 02      6grp_total_sub > Hat      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 753
1 2 3 4 range
A 1924.7
(-1.9)
P 		2292.1
(3)
P 		1842.9
(-3)
P 		2245.3
(2.4)
P 		449
B 1929.7
(-3)
P 		2304.4
(1.1)
P 		2477.9
(3)
P 		2257.5
(0.6)
P 		548
C 1898.5
(-1.3)
P 		1724.6
(-3)
P 		2341.3
(3)
P 		2172.1
(1.4)
P 		617
avr 1917.6
(-3) 		2107
(0.7) 		2220.7
(2.9) 		2225
(3) 		307

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1373
1 2 3 4 5 6 range
A 611.2
(-2)
P 		1721.6
(3)
P 		1253.4
(0.9)
P 		1088.5
(0.2)
P 		381.1
(-3)
P 		584.9
(-2.1)
P 		1341
B 645.6
(-1.5)
P 		1577.6
(3)
P 		1278.4
(1.5)
P 		972.1
(0)
P 		348.3
(-3)
P 		480.4
(-2.4)
P 		1229
C 831.8
(-0.8)
P 		1596.2
(3)
P 		1380.7
(1.9)
P 		928.1
(-0.3)
P 		396.4
(-3)
P 		628.6
(-1.8)
P 		1200
avr 696.2
(-1.5) 		1631.8
(3) 		1304.2
(1.4) 		996.2
(-0) 		375.3
(-3) 		564.6
(-2.1) 		1257
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 487
1 2 3 4 range
A 700.8
(3)
P 		497.6
(-0.3)
P 		481.8
(-0.5)
P 		328.7
(-3)
P 		372
B 615.4
(3)
P 		569.1
(0.9)
P 		574.2
(1.2)
P 		481.1
(-3)
P 		134
C 628.5
(0.5)
P 		495.8
(-1.3)
P 		816
(3)
P 		366.2
(-3)
P 		450
avr 648.2
(3) 		520.8
(0) 		624
(2.4) 		392
(-3) 		256

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 500
1 2 3 4 5 6 range
A 112.7
(-3)
P 		612.3
(3)
P 		273
(-1.1)
P 		276.1
(-1)
P 		115
(-3)
P 		142.4
(-2.6)
P 		500
B 224.6
(-1.7)
P 		525.1
(3)
P 		310.4
(-0.4)
P 		257.5
(-1.2)
P 		141.5
(-3)
P 		179.2
(-2.4)
P 		384
C 308.3
(0)
P 		487
(3)
P 		351.4
(0.7)
P 		186.7
(-2)
P 		128.3
(-3)
P 		210.4
(-1.6)
P 		359
avr 215.2
(-1.7) 		541.5
(3) 		311.6
(-0.3) 		240.1
(-1.4) 		128.3
(-3) 		177.3
(-2.3) 		413
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173905_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26230
Sequence Type Exemplar sequence
Representative Public ID AU109732 NCBI
Target Description AU109732 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=B0310.5 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AU109732 /WB_GENE_ID=B0310.5 /WP=CE03878 /CHR=X /FEA=Genomic Cluster /DEF=UDP galactosyltransferase; Caenorhabditis elegans cDNA clone:yk710e8 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075711(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075711 NCBI Caenorhabditis elegans B0310.5 (B0310.5) mRNA, complete cds. 11/11 A 
GENEFINDER00000007910 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:526074:530139:-1 11/11 None
SNAP00000007902 ENSEMBL cdna:SNAP chromosome:CEL140:X:526449:528573:-1 9/11 None
B0310.5 ENSEMBL cdna:known chromosome:CEL140:X:525943:530177:-1 gene:B0310.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:526074-530140(-) 100.0 100.0
Public Domain and Genome References
Gene Title UDP galactosyltransferase
Gene Symbol ugt-46
Ensembl B0310.5
Entrez Gene 180404 Entrez gene
SwissProt Q10941 EMBL-EBI
WormBase CE03878 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16758 transferase activity, transferring hexosyl groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA81769 Udp-glucuronosyltransferase protein 46 [Caenorhabditis elegans] ref|NP_508112.1| B0310.5 [Caenorhabditis elegans] sp|Q10941|UGT14_CAEEL Putative UDP-glucuronosyltransferase UGT14 precursor (UDPGT) 0.0
blast CAE70548 Hypothetical protein CBG17190 [Caenorhabditis briggsae] 0.0
blast CAE56922 Hypothetical protein CBG24767 [Caenorhabditis briggsae] 1.0E-172
blast AAA81769 Udp-glucuronosyltransferase protein 46 [Caenorhabditis elegans] ref|NP_508112.1| B0310.5 [Caenorhabditis elegans] sp|Q10941|UGT14_CAEEL Putative UDP-glucuronosyltransferase UGT14 precursor (UDPGT) 1.0E-163
Protein Domains
Database ID Description E-Value
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 3.3E-11
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 5.4E-17
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 5.4E-17
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508112.1 1 493-515
B0310.5 1 493-515
GENEFINDER00000007910 1 493-515
Sequence
Target Sequence 
>C. ELEGANS:173905_S_AT
gttccccgactatcattttgtgataagagctgataaatatgacttgagcacccgagaata
tgctaaatcagtttccaacgcttttgtgtctgattggctaccacaaccggcaattctcga
ccatcctcgcctcaaactcttcatcactcattctggctacaatagtattgttgaagcggc
gagagctggagttccacttatcaatattccttttatgtttgatcagaattgaaacagcag
agcagttgagaaaaaaggttggggaatccgaagacacaaaaaacaactgcttacggagcc
cgaggaaattgaaaaggctatttctgaaattattcacaacaagaggtactccttgaaagc
tcagagaatacgcgatcttatcaaatcaaaacccctcagttcttctcaattactgattaa
aactactgaatgggcaatcaaaaatcacggactcgacgaaattaagttcgaaagccgtgg
tcaaacaacttggacttattacaatttagatgtgattattccagtattttggcttagcat
ttctcttgtgatacctaccatttttgggtggtacaagttcagttgtttcgggcatgtgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCCCCGACTATCATTTTGTGATA 3 443 979 Antisense
AAATATGACTTGAGCACCCGAGAAT 616 113 1013 Antisense
ATATGCTAAATCAGTTTCCAACGCT 480 21 1036 Antisense
GTTTCCAACGCTTTTGTGTCTGATT 425 451 1049 Antisense
TGTGTCTGATTGGCTACCACAACCG 605 555 1063 Antisense
TTCATCACTCATTCTGGCTACAATA 340 689 1118 Antisense
AAGCGGCGAGAGCTGGAGTTCCACT 4 151 1152 Antisense
GAGTTCCACTTATCAATATTCCTTT 517 395 1167 Antisense
AAACAACTGCTTACGGAGCCCGAGG 268 129 1259 Antisense
GGGTGGTACAAGTTCAGTTGTTTCG 692 497 1544 Antisense
AGTTCAGTTGTTTCGGGCATGTGGA 617 63 1554 Antisense
Sequence Source Affymetrix Proprietary Database