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[173904_s_at] doublesex protein like

Description AV197051 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=C27C12.6 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV197051 /WB_GENE_ID=C27C12.6 /WP=CE23560 /CHR=X /FEA=Genomic Cluster /DEF=doublesex protein like; Caenorhabditis elegans cDNA clone:yk661f12 : 5prime end, single read.
Cluster 6grp_total > 33      4grp_total > 56      6grp_cgc > 71      6grp_cgc_sub > 03      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 83
1 2 3 4 range
A 23.2
(-3)
A 		40.9
(-0.1)
A 		60.1
(3)
A 		51.6
(1.6)
A 		37
B 91.7
(3)
A 		85.6
(2.4)
A 		49.8
(-1.3)
A 		33.9
(-3)
A 		58
C 70.2
(-2.4)
A 		66.5
(-3)
A 		106.2
(3)
A 		77.8
(-1.3)
A 		40
avr 61.7
(-0.5) 		64.3
(0.4) 		72
(3) 		54.4
(-3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 162
1 2 3 4 5 6 range
A 121.9
(1.7)
A 		94.2
(0.2)
A 		147.2
(3)
A 		62.5
(-1.5)
A 		35.1
(-2.9)
A 		33.9
(-3)
A 		113
B 90.7
(0.2)
A 		22.1
(-3)
A 		150.6
(3)
A 		91.9
(0.3)
A 		25.3
(-2.9)
A 		60.9
(-1.2)
A 		129
C 76.5
(-1.6)
A 		184.4
(3)
A 		81.1
(-1.4)
A 		75.2
(-1.7)
A 		75.9
(-1.7)
A 		44.5
(-3)
A 		140
avr 96.4
(0.8) 		100.2
(1.1) 		126.3
(3) 		76.5
(-0.7) 		45.4
(-3) 		46.4
(-2.9) 		81
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 8.5
(-2.3)
A 		8.9
(-2)
A 		15.7
(3)
A 		7.6
(-3)
A 		8
B 29.2
(3)
A 		21.1
(0.8)
A 		11.5
(-1.8)
A 		7.2
(-3)
A 		22
C 23.2
(-0.5)
A 		19.1
(-1.5)
A 		37
(3)
A 		13.1
(-3)
A 		24
avr 20.3
(2.5) 		16.4
(0.5) 		21.4
(3) 		9.3
(-3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 22.5
(0.4)
A 		33.5
(3)
A 		32.1
(2.7)
A 		15.9
(-1.2)
A 		10.6
(-2.5)
A 		8.3
(-3)
A 		25
B 31.6
(2)
A 		7.3
(-3)
A 		36.6
(3)
A 		24.3
(0.5)
A 		10.3
(-2.4)
A 		22.7
(0.2)
A 		29
C 28.4
(-1)
A 		56.3
(3)
A 		20.6
(-2.2)
A 		15.1
(-3)
A 		24.5
(-1.6)
A 		14.9
(-3)
A 		41
avr 27.5
(1.3) 		32.4
(3) 		29.8
(2.1) 		18.4
(-1.9) 		15.1
(-3) 		15.3
(-2.9) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173904_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26068
Sequence Type Exemplar sequence
Representative Public ID AV197051 NCBI
Target Description AV197051 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=C27C12.6 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV197051 /WB_GENE_ID=C27C12.6 /WP=CE23560 /CHR=X /FEA=Genomic Cluster /DEF=doublesex protein like; Caenorhabditis elegans cDNA clone:yk661f12 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078065(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078065 NCBI Caenorhabditis elegans C27C12.6 (C27C12.6) mRNA, complete cds. 11/11 None
SNAP00000037258 ENSEMBL cdna:SNAP chromosome:CEL140:X:14857350:14858799:-1 9/11 None
GENEFINDER00000037261 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:14857350:14861718:-1 11/11 None
C27C12.6 ENSEMBL cdna:known chromosome:CEL140:X:14857279:14861718:-1 gene:C27C12.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14857350-14861719(-) 100.0 100.0
Public Domain and Genome References
Gene Title doublesex protein like
Gene Symbol dmd-4
Ensembl C27C12.6
Entrez Gene 181581 Entrez gene
SwissProt Q18248 EMBL-EBI
WormBase CE23560 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1632729_AT doublesex-Mab related 93B dm
DROSGENOME1:150293_AT doublesex-Mab related 93B dm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
7548 sex differentiation inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA93739 Hypothetical protein C27C12.6 [Caenorhabditis elegans] ref|NP_510466.1| C27C12.6 [Caenorhabditis elegans] 1.0E-133
blast CAE63240 Hypothetical protein CBG07603 [Caenorhabditis briggsae] 1.0E-99
blast CAA93739 Hypothetical protein C27C12.6 [Caenorhabditis elegans] ref|NP_510466.1| C27C12.6 [Caenorhabditis elegans] 1.0E-93
blast CAE63240 Hypothetical protein CBG07603 [Caenorhabditis briggsae] 3.0E-60
blast XP_392966 PREDICTED: similar to CG8500-PA [Apis mellifera] 1.0E-32
Protein Domains
Database ID Description E-Value
Pfam IPR001275 EMBL-EBI DM DNA-binding 7.4E-23
Pfam IPR005173 EMBL-EBI DMRTA motif 2.1E-23
Pfam IPR005173 EMBL-EBI DMRTA motif 2.1E-23
Sequence
Target Sequence 
>C. ELEGANS:173904_S_AT
caacctcatcgcggaacgacaacgtgtgatggcagctcaggtggctttgaaaaggcggca
agccaccgaagatgcaattgctcttggactacgagttgttgctgggcaagcaattgatag
gctccctcaaggtccagtttggaacacagctggtggtgaagacgaagatatggactactt
ggatgaagaaatcgaagaaaaaccgccaactccagtgtcagaggaactcgtccctttgaa
acggaagaaagtagaggagacatacgaattgtcgagcttctcaccaattgaactcctgat
gactttattttgtgaacacgaaaagcacgtgctcgaacttgtgctcgaagcctgccatgg
aaatgtacttcaagccattgaacattttgcaaatgtgagacgagtgaaaaatattaatca
aatgaagctattcgctgcagcaacaaggatggatcacgtgtttccaaatatgacaaactt
tatacttccaaagcaatcttttctcattgattcgttgttagagcaaccaacattcccagt
ctccagtcaagcatctacaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAACCTCATCGCGGAACGACAACGT 482 187 166 Antisense
GTGATGGCAGCTCAGGTGGCTTTGA 685 483 191 Antisense
GACTACGAGTTGTTGCTGGGCAAGC 432 373 252 Antisense
GGGCAAGCAATTGATAGGCTCCCTC 178 493 269 Antisense
GCTCCCTCAAGGTCCAGTTTGGAAC 255 299 286 Antisense
ACCGCCAACTCCAGTGTCAGAGGAA 384 89 367 Antisense
GTCAGAGGAACTCGTCCCTTTGAAA 12 465 382 Antisense
TCGAGCTTCTCACCAATTGAACTCC 13 601 437 Antisense
GTGCTCGAACTTGTGCTCGAAGCCT 33 479 494 Antisense
TAGAGCAACCAACATTCCCAGTCTC 344 651 684 Antisense
CAGTCTCCAGTCAAGCATCTACAAG 587 207 702 Antisense
Sequence Source Affymetrix Proprietary Database