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[173902_s_at]

Description C34284_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=R52.10 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C34284 /WB_GENE_ID=R52.10 /WP=CE12842 /CHR=2 /FEA=Genomic Cluster /DEF=(ST.LOUIS) TR:O17295 protein_id:AAB71067.1; C.elegans cDNA clone yk394d4 : 3prime end, single read.
Cluster 6grp_total > 88      4grp_total > 36      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 20.4
(3)
A 		4.8
(-2.4)
A 		3
(-3)
A 		9.6
(-0.7)
A 		17
B 4.8
(-2.4)
A 		24
(3)
A 		2.7
(-3)
A 		6.5
(-1.9)
A 		21
C 2.4
(-3)
A 		3.2
(-2.1)
A 		2.8
(-2.5)
A 		7.5
(3)
A 		5
avr 9.2
(1.9) 		10.7
(3) 		2.8
(-3) 		7.9
(0.9) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 7.6
(-1.2)
A 		1.8
(-2.9)
A 		6
(-1.7)
A 		7.5
(-1.3)
A 		22.1
(3)
A 		1.6
(-3)
A 		21
B 3.7
(-2.6)
A 		1.9
(-2.9)
A 		2.3
(-2.8)
A 		1
(-3)
A 		2.4
(-2.8)
A 		42.1
(3)
A 		41
C 1
(-3)
A 		6.5
(-0.5)
A 		1.8
(-2.6)
A 		3.6
(-1.8)
A 		14.2
(3)
A 		11.1
(1.6)
A 		13
avr 4.1
(-2.7) 		3.4
(-3) 		3.4
(-3) 		4
(-2.8) 		12.9
(0.8) 		18.3
(3) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 7.4
(3)
A 		1
(-2.8)
A 		0.8
(-3)
A 		1.4
(-2.5)
A 		7
B 1.5
(-2)
A 		5.9
(3)
A 		0.6
(-3)
A 		1.4
(-2.1)
A 		5
C 0.8
(-3)
A 		0.9
(-1.8)
A 		1
(-0.6)
A 		1.3
(3)
A 		1
avr 3.2
(3) 		2.6
(1.5) 		0.8
(-3) 		1.4
(-1.5) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 1.4
(-2)
A 		0.6
(-2.8)
A 		1.3
(-2.1)
A 		1.9
(-1.6)
A 		6.7
(3)
A 		0.4
(-3)
A 		6
B 1.3
(-2.6)
A 		0.6
(-2.9)
A 		0.6
(-2.9)
A 		0.3
(-3)
A 		1
(-2.7)
A 		15.7
(3)
A 		15
C 0.4
(-3)
A 		2
(-0.7)
A 		0.5
(-2.9)
A 		0.7
(-2.6)
A 		4.6
(3)
A 		3.7
(1.7)
A 		4
avr 1
(-2.8) 		1.1
(-2.7) 		0.8
(-3) 		1
(-2.8) 		4.1
(0.4) 		6.6
(3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173902_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.23601
Sequence Type Exemplar sequence
Representative Public ID C34284 NCBI
Target Description C34284_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=R52.10 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C34284 /WB_GENE_ID=R52.10 /WP=CE12842 /CHR=2 /FEA=Genomic Cluster /DEF=(ST.LOUIS) TR:O17295 protein_id:AAB71067.1; C.elegans cDNA clone yk394d4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027114(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027114 NCBI Caenorhabditis elegans R52.10 (R52.10) mRNA, complete cds. 11/11 None
SNAP00000034567 ENSEMBL cdna:SNAP chromosome:CEL140:II:2123688:2124438:-1 11/11 None
GENEFINDER00000034577 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2123688:2124438:-1 11/11 None
R52.10.2 ENSEMBL cdna:known chromosome:CEL140:II:2123510:2129282:-1 gene:R52.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
R52.10.1 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2123519-2129282(-) 100.0 100.0
Public Domain and Genome References
Ensembl R52.10
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK72052 Hypothetical protein R52.10a [Caenorhabditis elegans] ref|NP_001022285.1| R52.10 [Caenorhabditis elegans] 1.0E-112
blast H88066 protein R52.10 [imported] - Caenorhabditis elegans 1.0E-93
blast AAB71059 Hypothetical protein R52.1 [Caenorhabditis elegans] ref|NP_494192.1| R52.1 [Caenorhabditis elegans] 1.0E-86
blast H88066 protein R52.10 [imported] - Caenorhabditis elegans 2.0E-69
blast H88066 protein R52.10 [imported] - Caenorhabditis elegans 1.0E-57
blast AAB71059 Hypothetical protein R52.1 [Caenorhabditis elegans] ref|NP_494192.1| R52.1 [Caenorhabditis elegans] 2.0E-57
blast AAB71059 Hypothetical protein R52.1 [Caenorhabditis elegans] ref|NP_494192.1| R52.1 [Caenorhabditis elegans] 8.0E-52
Protein Domains
Database ID Description E-Value
Pfam IPR002083 EMBL-EBI MATH 3.7E-47
Pfam IPR000210 EMBL-EBI BTB/POZ domain 5.1E-16
Pfam IPR000210 EMBL-EBI BTB/POZ domain 9.9E-15
Pfam IPR000210 EMBL-EBI BTB/POZ domain 3.3E-6
Pfam IPR000210 EMBL-EBI BTB/POZ domain 0.0019
Pfam IPR000210 EMBL-EBI BTB/POZ domain 5.6E-11
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000034567 1 157-179
GENEFINDER00000034577 1 142-164
Sequence
Target Sequence 
>C. ELEGANS:173902_S_AT
atgtggttcttgatattggaggcaagaagttttatgttctcaaaaagaaccttcttgagg
ttctatacggagaacctgcaattgatgaggacaccattgatggaattcttaccttggctc
acaagttcaccatgtcgcttccgattcaaaaatgcgaagagtttttgatcgagaaatctg
agaaatcagttaaggagaaactcaaactggttaagcaatatcagctgaagagcttaaaga
tgcattgcctctcaaaaattaatacaatcaacgaaatcagagcagtggcaccatttgatc
ataatgacatggatccagaagtaattgcagctcttcttaacaaatcactggccaatatta
acttctatttagcctgttttttgggtttcgcgttcatttttttgctaattctctctgtcg
gctttattatcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTGGTTCTTGATATTGGAGGCAA 428 49 462 Antisense
GGACACCATTGATGGAATTCTTACC 346 525 550 Antisense
GAGCTTAAAGATGCATTGCCTCTCA 416 387 691 Antisense
AGAGCAGTGGCACCATTTGATCATA 578 69 740 Antisense
GGATCCAGAAGTAATTGCAGCTCTT 654 511 772 Antisense
AGCTCTTCTTAACAAATCACTGGCC 410 77 790 Antisense
ATCACTGGCCAATATTAACTTCTAT 275 27 805 Antisense
TAACTTCTATTTAGCCTGTTTTTTG 384 639 820 Antisense
TGGGTTTCGCGTTCATTTTTTTGCT 218 553 843 Antisense
TTTTTTGCTAATTCTCTCTGTCGGC 178 675 859 Antisense
TTCTCTCTGTCGGCTTTATTATCAA 471 691 870 Antisense
Sequence Source Affymetrix Proprietary Database