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[173900_s_at] phosphate permease like

Description AU114393_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=B0331.2 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AU114393 /WB_GENE_ID=B0331.2 /WP=CE15552 /CHR=5 /FEA=Genomic Cluster /DEF=phosphate permease like; Caenorhabditis elegans cDNA clone:yk718f5 : 3prime end, single read.
Cluster 6grp_total > 81      4grp_total > 41      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 164
1 2 3 4 range
A 50.8
(-3)
A 		131.6
(2.4)
M 		95.6
(-0)
M 		141.4
(3)
A 		91
B 42.3
(-3)
A 		175.2
(3)
P 		133.7
(1.1)
P 		56.6
(-2.4)
A 		133
C 11.1
(-3)
A 		133.4
(2.5)
P 		144.6
(3)
P 		80
(0.1)
A 		134
avr 34.7
(-3) 		146.7
(3) 		124.6
(1.8) 		92.7
(0.1) 		112

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 169
1 2 3 4 5 6 range
A 84
(-0.9)
A 		74.9
(-1.6)
A 		118.8
(1.8)
P 		134.4
(3)
P 		128.3
(2.5)
P 		56.8
(-3)
A 		78
B 64.6
(-0.9)
A 		52.5
(-1.5)
A 		89
(0.2)
P 		146.2
(3)
P 		143.2
(2.9)
P 		21.9
(-3)
A 		124
C 84.3
(-1.6)
A 		91
(-1.3)
P 		59.6
(-2.7)
A 		190.4
(3)
P 		95.1
(-1.1)
P 		52.6
(-3)
A 		138
avr 77.6
(-1.2) 		72.8
(-1.5) 		89.1
(-0.6) 		157
(3) 		122.2
(1.2) 		43.8
(-3) 		113
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 18.5
(-3)
A 		28.6
(3)
M 		25
(0.9)
M 		20.7
(-1.7)
A 		10
B 13.5
(-2.7)
A 		43.3
(3)
P 		31
(0.6)
P 		12.1
(-3)
A 		31
C 3.7
(-3)
A 		38.3
(1.4)
P 		50.4
(3)
P 		13.5
(-1.7)
A 		47
avr 11.9
(-3) 		36.7
(3) 		35.5
(2.7) 		15.4
(-2.2) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 15.5
(-2.6)
A 		26.7
(0.1)
A 		25.9
(-0.1)
P 		34.1
(1.9)
P 		38.7
(3)
P 		13.8
(-3)
A 		25
B 22.5
(-1.3)
A 		17.5
(-1.9)
A 		21.6
(-1.4)
P 		38.7
(0.7)
P 		58.2
(3)
P 		8.2
(-3)
A 		50
C 31.3
(1.2)
A 		27.8
(0.3)
P 		15.2
(-3)
A 		38.3
(3)
P 		30.8
(1.1)
P 		17.6
(-2.4)
A 		23
avr 23.1
(-1) 		24
(-0.8) 		20.9
(-1.4) 		37
(1.9) 		42.6
(3) 		13.2
(-3) 		29
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173900_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25177
Sequence Type Exemplar sequence
Representative Public ID AU114393 NCBI
Target Description AU114393_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=B0331.2 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AU114393 /WB_GENE_ID=B0331.2 /WP=CE15552 /CHR=5 /FEA=Genomic Cluster /DEF=phosphate permease like; Caenorhabditis elegans cDNA clone:yk718f5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073090(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073090 NCBI Caenorhabditis elegans B0331.2 (B0331.2) mRNA, complete cds. 11/11 None
SNAP00000018468 ENSEMBL cdna:SNAP chromosome:CEL140:V:9661578:9664197:-1 11/11 None
GENEFINDER00000018470 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9661578:9664197:-1 11/11 None
B0331.2 ENSEMBL cdna:known chromosome:CEL140:V:9661515:9664198:-1 gene:B0331.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9661525-9664198(-) 100.0 100.0
Public Domain and Genome References
Gene Title phosphate permease like
Ensembl B0331.2
Entrez Gene 179355 Entrez gene
SwissProt O45220 EMBL-EBI
WormBase CE15552 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6817 phosphate transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5315 inorganic phosphate transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB11776 Hypothetical protein B0331.2 [Caenorhabditis elegans] ref|NP_505491.1| B0331.2 [Caenorhabditis elegans] 0.0
blast CAE72224 Hypothetical protein CBG19336 [Caenorhabditis briggsae] 0.0
blast CAE72112 Hypothetical protein CBG19205 [Caenorhabditis briggsae] 1.0E-66
Protein Domains
Database ID Description E-Value
Pfam IPR001204 EMBL-EBI Phosphate transporter 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505491.1 9 17-36,51-73,150-172,196-218,231-253,266-288,408-427,442-464,497-519
B0331.2 9 17-36,51-73,150-172,196-218,231-253,266-288,408-427,442-464,497-519
SNAP00000018468 9 17-36,51-73,150-172,196-218,231-253,266-288,408-427,442-464,497-519
GENEFINDER00000018470 9 17-36,51-73,150-172,196-218,231-253,266-288,408-427,442-464,497-519
Sequence
Target Sequence 
>C. ELEGANS:173900_S_AT
gggcgtatgttccagaagatcgtctaactaaaaaagtgtttaatactcttcaaataatct
catcatcaatgctctccttcactcatggagccaatgatactggaaacacaattgcaccat
tgcttgccatttggctttgctatgagtccggttatgcatttggaaatgccgaaactcgag
atgatactcaaatgcttcttgcatatggatcattggcaatgattgttggttttgtgacac
ttggacataggacaatcaagttattagctcatgaaatgactgtagatatgtcaccaatat
ctggattttgcatcgaagtgggaactgcattcaccgttctcatttgcgttaaatttggaa
ttccgatctcttcaactcattgtactgtcggtgcagtagtttttgttggaatggccaaat
caacaagtgaaggagtttcatttggaacattcagaaaaatatgtttcttttggcttctct
gtttcccaatgtctgcaattattggaatcggagcaactatcattctccagcaatttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGCGTATGTTCCAGAAGATCGTCT 117 493 1044 Antisense
CTCTCCTTCACTCATGGAGCCAATG 130 231 1115 Antisense
GCACCATTGCTTGCCATTTGGCTTT 79 315 1157 Antisense
ATTTGGCTTTGCTATGAGTCCGGTT 699 15 1172 Antisense
CGAAGTGGGAACTGCATTCACCGTT 314 249 1357 Antisense
CATTCACCGTTCTCATTTGCGTTAA 99 215 1371 Antisense
TTGGAATTCCGATCTCTTCAACTCA 196 709 1398 Antisense
TCAACTCATTGTACTGTCGGTGCAG 384 631 1415 Antisense
AAATATGTTTCTTTTGGCTTCTCTG 208 117 1500 Antisense
CTGTTTCCCAATGTCTGCAATTATT 104 239 1522 Antisense
GCAACTATCATTCTCCAGCAATTTC 611 319 1556 Antisense
Sequence Source Affymetrix Proprietary Database