[Home] | [Total List]

[173899_at] calcium/calmodulin dependent protein kinase

Description C64356 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=ZC373.4 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C64356 /WB_GENE_ID=ZC373.4 /WP=CE02377 /CHR=X /FEA=Genomic Cluster /DEF=calcium-calmodulin dependent protein kinase; C.elegans cDNA clone yk358a2 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 84      6grp_high1_10_10 > 58      4grp_high_8_8 > 06      6grp_highest_nonorm > 81      6grp_total > 47      4grp_total > 03      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 419
1 2 3 4 range
A 304.8
(-0.1)
P 		244.7
(-1.2)
A 		153.9
(-3)
A 		462.7
(3)
P 		309
B 165.6
(-2.8)
P 		172.9
(-2.6)
P 		160.2
(-3)
P 		375.1
(3)
P 		215
C 201.9
(-3)
P 		222
(-2.7)
P 		283.3
(-1.7)
P 		573.2
(3)
P 		371
avr 224.1
(-2.4) 		213.2
(-2.7) 		199.1
(-3) 		470.3
(3) 		271

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 252
1 2 3 4 5 6 range
A 258.4
(3)
P 		204.2
(-0.1)
P 		154.8
(-3)
P 		241.5
(2)
P 		215.2
(0.5)
P 		254.5
(2.8)
P 		104
B 316.3
(2.2)
P 		341.3
(3)
P 		246.9
(0.1)
P 		148.2
(-3)
P 		224.5
(-0.6)
P 		253.5
(0.3)
P 		193
C 238.2
(-1.6)
P 		251.3
(-1.2)
P 		209.9
(-2.4)
P 		216.2
(-2.2)
P 		187.1
(-3)
P 		400.2
(3)
P 		213
avr 271
(1.1) 		265.6
(0.8) 		203.9
(-2.9) 		202
(-3) 		208.9
(-2.6) 		302.7
(3) 		101
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 111
(3)
P 		53.1
(-1.9)
A 		40.2
(-3)
A 		67.7
(-0.7)
P 		71
B 52.8
(-0.8)
P 		42.7
(-2.2)
P 		37.1
(-3)
P 		79.9
(3)
P 		43
C 66.8
(-2.5)
P 		63.8
(-3)
P 		98.7
(3)
P 		96.6
(2.6)
P 		35
avr 76.9
(2) 		53.2
(-3) 		58.7
(-1.8) 		81.4
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 100
1 2 3 4 5 6 range
A 47.6
(-0.9)
P 		72.6
(3)
P 		33.7
(-3)
P 		61.2
(1.2)
P 		65
(1.8)
P 		62
(1.4)
P 		39
B 110
(2.7)
P 		113.6
(3)
P 		60
(-1.3)
P 		39.3
(-3)
P 		91.2
(1.2)
P 		94.5
(1.5)
P 		74
C 88.3
(-0)
P 		76.7
(-0.8)
P 		53.4
(-2.3)
P 		43.5
(-3)
P 		60.5
(-1.9)
P 		134
(3)
P 		91
avr 82
(1.2) 		87.6
(1.9) 		49
(-2.9) 		48
(-3) 		72.2
(-0) 		96.8
(3) 		49
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173899_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25839
Sequence Type Exemplar sequence
Representative Public ID C64356 NCBI
Target Description C64356 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=ZC373.4 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C64356 /WB_GENE_ID=ZC373.4 /WP=CE02377 /CHR=X /FEA=Genomic Cluster /DEF=calcium-calmodulin dependent protein kinase; C.elegans cDNA clone yk358a2 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077288(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077288 NCBI Caenorhabditis elegans ZC373.4 (ZC373.4) mRNA, complete cds. 11/11 None
ZC373.4 ENSEMBL cdna:known chromosome:CEL140:X:10062380:10069713:-1 gene:ZC373.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10062427-10069714(-) 100.0 100.0
Public Domain and Genome References
Gene Title calcium/calmodulin dependent protein kinase
Ensembl ZC373.4
Entrez Gene 181217 Entrez gene
SwissProt Q23260 EMBL-EBI
WormBase CE02377 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
4674 protein serine/threonine kinase activity inferred from electronic annotation QuickGO AmiGO
4713 protein-tyrosine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA88976 Hypothetical protein ZC373.4 [Caenorhabditis elegans] ref|NP_509689.1| ZC373.4 [Caenorhabditis elegans] 0.0
blast CAE58772 Hypothetical protein CBG01967 [Caenorhabditis briggsae] 0.0
blast AAB25794 155 kda myosin light chain kinase homolog [Bos taurus] sp|Q28824|MYLK_BOVIN Myosin light chain kinase, smooth muscle (MLCK) [Contains: Telokin] 4.0E-71
Protein Families
Method ID Description E-Value
hanks 2.1.15 CaMK Group; CaMK I Regulated by Ca2+/CaM and close relatives; MLCK-M 2.0E-79
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 2.1E-78
Sequence
Target Sequence 
>C. ELEGANS:173899_AT
aagtttgccaaataatcattcaattttcatttaatttatgaagtatccattgtatctgaa
ctcatatcaagttggttttactggtttcttaaaactattcctttccttccatccgccgct
ttttttgtataacgagttttttcttgttcagttttcttatggcttggctccaagtgtctt
gtcttttgttcgatttctagaacaatttgaaatattggttagctttcttgccttcaccga
gcacaaacagttggtccctaaggttgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGTTTGCCAAATAATCATTCAATT 396 157 3635 Antisense
GTATCCATTGTATCTGAACTCATAT 547 455 3677 Antisense
TATCAAGTTGGTTTTACTGGTTTCT 182 651 3699 Antisense
CATCCGCCGCTTTTTTTGTATAACG 607 209 3744 Antisense
TATAACGAGTTTTTTCTTGTTCAGT 160 653 3762 Antisense
GTTCAGTTTTCTTATGGCTTGGCTC 580 443 3780 Antisense
ATGGCTTGGCTCCAAGTGTCTTGTC 589 51 3793 Antisense
GTGTCTTGTCTTTTGTTCGATTTCT 408 487 3808 Antisense
TATTGGTTAGCTTTCTTGCCTTCAC 383 665 3847 Antisense
TTGCCTTCACCGAGCACAAACAGTT 142 701 3862 Antisense
CAAACAGTTGGTCCCTAAGGTTGAT 494 189 3878 Antisense
Sequence Source Affymetrix Proprietary Database