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[173892_s_at]

Description AV187495 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=C07G2.2A /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV187495 /WB_GENE_ID=C07G2.2A /WP=CE19687 /CHR=3 /FEA=Genomic Cluster /DEF=bZIP transcription factor; Caenorhabditis elegans cDNA clone:yk512e8 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 80      6grp_high1_10_10 > 18      4grp_highest_8_8 > 51      4grp_high_8_8 > 32      6grp_highest_nonorm > 0      6grp_total > 18      4grp_total > 47      6grp_cgc > 02      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1094
1 2 3 4 range
A 2182.6
(3)
P 		1470.1
(-1)
P 		1121.3
(-3)
P 		1332
(-1.8)
P 		1061
B 2088.7
(3)
P 		1089.1
(-3)
P 		1133.2
(-2.7)
P 		1203.9
(-2.3)
P 		1000
C 1652.5
(3)
P 		1121.1
(-3)
P 		1181.5
(-2.3)
P 		1298.1
(-1)
P 		531
avr 1974.6
(3) 		1226.8
(-2.4) 		1145.3
(-3) 		1278
(-2) 		829

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1424
1 2 3 4 5 6 range
A 2119.4
(3)
P 		1426.1
(-1.2)
P 		1424.5
(-1.2)
P 		1165.2
(-2.8)
P 		1453.8
(-1)
P 		1127.4
(-3)
P 		992
B 2184
(3)
P 		1749.8
(1.1)
P 		805
(-3)
P 		1406.8
(-0.4)
P 		1214.3
(-1.2)
P 		1356
(-0.6)
P 		1379
C 2228.5
(3)
P 		1461.1
(-0.9)
P 		1208.7
(-2.2)
P 		1050.1
(-3)
P 		1865.4
(1.2)
P 		1117.1
(-2.7)
P 		1178
avr 2177.3
(3) 		1545.7
(-0.7) 		1146.1
(-3) 		1207.4
(-2.6) 		1511.2
(-0.9) 		1200.2
(-2.7) 		1031
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 600
1 2 3 4 range
A 794.7
(3)
P 		319.1
(-1.8)
P 		293.1
(-2)
P 		195
(-3)
P 		600
B 666.1
(3)
P 		269
(-2.8)
P 		262.6
(-2.9)
P 		256.6
(-3)
P 		410
C 547
(3)
P 		322.3
(-1.1)
P 		411.8
(0.5)
P 		218.9
(-3)
P 		328
avr 669.3
(3) 		303.5
(-1.9) 		322.5
(-1.7) 		223.5
(-3) 		446

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 631
1 2 3 4 5 6 range
A 390.7
(-0)
P 		507.2
(3)
P 		310.2
(-2.1)
P 		295.5
(-2.5)
P 		438.7
(1.2)
P 		274.5
(-3)
P 		233
B 759.9
(3)
P 		582.4
(1.1)
P 		195.5
(-3)
P 		372.6
(-1.1)
P 		493.4
(0.2)
P 		505.7
(0.3)
P 		564
C 826
(3)
P 		445.8
(-0.7)
P 		307.6
(-2.1)
P 		211.2
(-3)
P 		603.6
(0.8)
P 		374
(-1.4)
P 		615
avr 658.9
(3) 		511.8
(0.7) 		271.1
(-3) 		293.1
(-2.7) 		511.9
(0.7) 		384.7
(-1.2) 		388
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173892_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.24226
Sequence Type Exemplar sequence
Representative Public ID AV187495 NCBI
Target Description AV187495 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=C07G2.2A /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV187495 /WB_GENE_ID=C07G2.2A /WP=CE19687 /CHR=3 /FEA=Genomic Cluster /DEF=bZIP transcription factor; Caenorhabditis elegans cDNA clone:yk512e8 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065513(11), NM_001025990(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065513 NCBI Caenorhabditis elegans ATF (cAMP-dependent transciption factor) family member (atf-7) (atf-7) mRNA, complete cds. 11/11 None
NM_001025990 NCBI Caenorhabditis elegans ATF (cAMP-dependent transciption factor) family member (atf-7) (atf-7) mRNA, complete cds. 11/11 None
C07G2.2a.3 ENSEMBL cdna:known chromosome:CEL140:III:4491598:4499447:-1 gene:C07G2.2 11/11 A 
C07G2.2a.4 ENSEMBL cdna:known chromosome:CEL140:III:4491598:4499094:-1 gene:C07G2.2 11/11 None
C07G2.2a.2 ENSEMBL cdna:known chromosome:CEL140:III:4491598:4499009:-1 gene:C07G2.2 11/11 A 
C07G2.2a.1 ENSEMBL cdna:known chromosome:CEL140:III:4491598:4499011:-1 gene:C07G2.2 11/11 A 
C07G2.2c.1 ENSEMBL cdna:known chromosome:CEL140:III:4491668:4494416:-1 gene:C07G2.2 11/11 None
C07G2.2c.2 ENSEMBL cdna:known chromosome:CEL140:III:4491668:4494442:-1 gene:C07G2.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
175587 3 2 NM_001025990 173892_s_at (11)
NM_065513 173892_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4491665-4494047(-) 100.0 100.0
Public Domain and Genome References
Ensembl C07G2.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB63430 Hypothetical protein C07G2.2a [Caenorhabditis elegans] ref|NP_497914.2| ATF (cAMP-dependent transciption factor) family member (atf-7) [Caenorhabditis elegans] 0.0
blast CAA83680 Hypothetical protein C07G2.2b [Caenorhabditis elegans] ref|NP_497913.1| ATF (cAMP-dependent transciption factor) family member (atf-7) [Caenorhabditis elegans] 0.0
blast CAD88215 Hypothetical protein C07G2.2c [Caenorhabditis elegans] ref|NP_001021161.1| ATF (cAMP-dependent transciption factor) family member (atf-7) [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:173892_S_AT
cccaaactccaatgattcttccgattcctgcgcgtctcacaatttcacttcccccaattt
tctctctctctctctcgtcccgtttgaatctcatgaatttatgtgtatttttcgtttctt
ttttcattatcaacctatatgtccaagcttttactgaacctaattatgctgtacaatttt
tttttcgaatctgtcaaccgcacacatcccataaaccctctagaaagttaaacttgtaca
gatgtgcacccctgttaagatttaccaattcctacttttcccccaaacacaaaaatctca
aatctcttctatttcctctcattttttcccttcctcatcttcttctagtgttgtgagaaa
ataaaacaaaatccaggtttttggcgataattgattaaatttatattcaaaagctaataa
ctctattatttatttggttccttttgcacacctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCCAAACTCCAATGATTCTTCCGAT 128 259 1316 Antisense
TCTCGTCCCGTTTGAATCTCATGAA 452 611 1388 Antisense
TTTCTTTTTTCATTATCAACCTATA 652 671 1430 Antisense
TATGTCCAAGCTTTTACTGAACCTA 564 655 1453 Antisense
TATGCTGTACAATTTTTTTTTCGAA 672 655 1480 Antisense
TTTCGAATCTGTCAACCGCACACAT 207 669 1498 Antisense
CACATCCCATAAACCCTCTAGAAAG 23 197 1518 Antisense
AAACTTGTACAGATGTGCACCCCTG 6 127 1545 Antisense
TGTGCACCCCTGTTAAGATTTACCA 108 557 1558 Antisense
TTCCTCATCTTCTTCTAGTGTTGTG 204 701 1646 Antisense
TTATTTGGTTCCTTTTGCACACCTC 431 679 1745 Antisense
Sequence Source Affymetrix Proprietary Database