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[173891_s_at]

Description C70890 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=Y44E3B.1 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C70890 /WB_GENE_ID=Y44E3B.1 /WP=CE18390 /CHR=1 /FEA=Genomic Cluster /DEF=(ST.LOUIS) TR:O76709 protein_id:AAC64635.1; C.elegans cDNA clone yk437c3 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 97      6grp_high1_10_10 > 78      4grp_high_8_8 > 0      6grp_highest_nonorm > 90      6grp_total > 69      4grp_total > 39      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 90
1 2 3 4 range
A 158.3
(2.9)
P 		158.6
(3)
P 		142.3
(-0.6)
P 		131.3
(-3)
A 		27
B 174.1
(3)
P 		91.5
(-3)
P 		113
(-1.4)
P 		173.7
(3)
P 		83
C 181.6
(3)
P 		91.5
(-3)
P 		168.6
(2.1)
P 		119.4
(-1.1)
P 		90
avr 171.3
(3) 		113.9
(-3) 		141.3
(-0.1) 		141.5
(-0.1) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 79
1 2 3 4 5 6 range
A 132.9
(-2.7)
P 		129.1
(-3)
P 		145.6
(-1.7)
P 		147.9
(-1.6)
P 		146.5
(-1.7)
P 		207.8
(3)
P 		79
B 158.3
(0.8)
P 		142.9
(-2.1)
P 		160.6
(1.3)
P 		138
(-3)
P 		169.9
(3)
P 		167.9
(2.6)
P 		32
C 170.9
(2.9)
P 		131.7
(-3)
P 		144.2
(-1.1)
P 		136.6
(-2.3)
P 		165.5
(2.1)
P 		171.5
(3)
P 		40
avr 154
(-0.6) 		134.6
(-3) 		150.1
(-1.1) 		140.8
(-2.2) 		160.6
(0.3) 		182.4
(3) 		48
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 57.6
(3)
P 		34.4
(-0.6)
P 		37.2
(-0.2)
P 		19.2
(-3)
A 		38
B 55.5
(3)
P 		22.6
(-3)
P 		26.2
(-2.3)
P 		37
(-0.4)
P 		33
C 60.1
(3)
P 		26.3
(-2.1)
P 		58.8
(2.8)
P 		20.1
(-3)
P 		40
avr 57.7
(3) 		27.8
(-2.6) 		40.7
(-0.2) 		25.4
(-3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 24.5
(-3)
P 		45.9
(1.9)
P 		31.7
(-1.3)
P 		37.5
(-0)
P 		44.2
(1.5)
P 		50.6
(3)
P 		26
B 55.1
(0.4)
P 		47.6
(-1)
P 		39
(-2.6)
P 		36.6
(-3)
P 		69
(3)
P 		62.6
(1.8)
P 		32
C 63.4
(3)
P 		40.2
(-0.9)
P 		36.7
(-1.5)
P 		27.5
(-3)
P 		53.6
(1.4)
P 		57.4
(2)
P 		36
avr 47.7
(0.6) 		44.6
(-0.2) 		35.8
(-2.5) 		33.9
(-3) 		55.6
(2.7) 		56.9
(3) 		23
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173891_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22482
Sequence Type Exemplar sequence
Representative Public ID C70890 NCBI
Target Description C70890 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=Y44E3B.1 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C70890 /WB_GENE_ID=Y44E3B.1 /WP=CE18390 /CHR=1 /FEA=Genomic Cluster /DEF=(ST.LOUIS) TR:O76709 protein_id:AAC64635.1; C.elegans cDNA clone yk437c3 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058732(11), NM_058731(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058732 NCBI Caenorhabditis elegans Y44E3B.1b (Y44E3B.1) mRNA, complete cds. 11/11 A 
NM_058731 NCBI Caenorhabditis elegans Y44E3B.1a (Y44E3B.1) mRNA, complete cds. 11/11 A 
Y44E3B.1b.2 ENSEMBL cdna:known chromosome:CEL140:I:3264287:3265858:-1 gene:Y44E3B.1 11/11 A 
Y44E3B.1a ENSEMBL cdna:known chromosome:CEL140:I:3264287:3265855:-1 gene:Y44E3B.1 11/11 A 
Y44E3B.1b.1 ENSEMBL cdna:known chromosome:CEL140:I:3264287:3266763:-1 gene:Y44E3B.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3264406-3265856(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y44E3B.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK21516 Hypothetical protein Y44E3B.1a [Caenorhabditis elegans] ref|NP_491132.1| Y44E3B.1a [Caenorhabditis elegans] 1.0E-156
blast AAK21516 Hypothetical protein Y44E3B.1a [Caenorhabditis elegans] ref|NP_491132.1| Y44E3B.1a [Caenorhabditis elegans] 1.0E-143
blast AAK68487 Hypothetical protein Y44E3B.1b [Caenorhabditis elegans] ref|NP_491133.1| Y44E3B.1b [Caenorhabditis elegans] 1.0E-143
Sequence
Target Sequence 
>C. ELEGANS:173891_S_AT
gcaactaaatccatacgaacggcacgtggcttatggccccggttttcgaaatcccggtga
atacgaggaacaagacggatataaaatgaatttcgaggtgaagaccgaggaggagaagaa
gccggaaacgatgaaaacttcgaaaactatgacaactcgccgagctattaaacgaccttc
gtgttacgacgattatcaggaagaaggagaaacatcgctttcggataacgatgaaagtgt
cgatgattcttattacaaaccaaaaagttccaaaaagactgctgcagcggtaccaaattt
cgtgccaaaaaccaaggctcgaaaatacaatctaaagccggataaggagaaagtggagcc
catctataaattgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAACTAAATCCATACGAACGGCAC 22 315 340 Antisense
ACGAACGGCACGTGGCTTATGGCCC 71 91 354 Antisense
GAAATCCCGGTGAATACGAGGAACA 401 361 387 Antisense
GAAAACTATGACAACTCGCCGAGCT 167 355 481 Antisense
CTCGCCGAGCTATTAAACGACCTTC 236 233 495 Antisense
TAAACGACCTTCGTGTTACGACGAT 89 637 508 Antisense
GAGAAACATCGCTTTCGGATAACGA 188 393 546 Antisense
AAGACTGCTGCAGCGGTACCAAATT 312 153 614 Antisense
CAGCGGTACCAAATTTCGTGCCAAA 14 201 624 Antisense
TTTCGTGCCAAAAACCAAGGCTCGA 237 671 637 Antisense
AAGTGGAGCCCATCTATAAATTGAA 488 157 690 Antisense
Sequence Source Affymetrix Proprietary Database