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[173886_at]

Description C30483_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=Y45G5AM.A /5_PRIME_EXT_DB=WormBase Gene ID /GB=C30483 /WB_GENE_ID=Y45G5AM.A /WP=CE26398 /CHR=5 /FEA=Genomic Cluster /DEF=(ST.LOUIS) protein_id:AAG23358.1; C.elegans cDNA clone yk254c10 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 95      6grp_high1_10_10 > 59      4grp_highest_8_8 > 44      4grp_high_8_8 > 08      6grp_highest_nonorm > 82      6grp_total > 79      4grp_total > 31      6grp_highest_sub > Cu      6grp_high1_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 397
1 2 3 4 range
A 536.1
(3)
P 		313.7
(-1.6)
P 		375.7
(-0.3)
P 		247
(-3)
P 		289
B 348.1
(-3)
P 		449.1
(0.1)
P 		469.9
(0.8)
P 		541.6
(3)
P 		194
C 644
(3)
P 		374.5
(-3)
P 		397.4
(-2.5)
P 		512.8
(0.1)
P 		270
avr 509.4
(3) 		379.1
(-3) 		414.3
(-1.4) 		433.8
(-0.5) 		130

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 325
1 2 3 4 5 6 range
A 288
(-3)
P 		519.9
(3)
P 		349.5
(-1.4)
P 		293.3
(-2.9)
P 		480.2
(2)
P 		455
(1.3)
P 		232
B 512.2
(2.2)
P 		398
(-0.4)
P 		348.2
(-1.6)
P 		284.5
(-3)
P 		395.2
(-0.5)
P 		549
(3)
P 		265
C 473.4
(2.1)
P 		361.6
(-0.2)
P 		299.8
(-1.5)
P 		224.5
(-3)
P 		520
(3)
P 		481.3
(2.2)
P 		296
avr 424.5
(1.1) 		426.5
(1.2) 		332.5
(-1.3) 		267.4
(-3) 		465.1
(2.2) 		495.1
(3) 		228
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 177
1 2 3 4 range
A 195.2
(3)
P 		68.1
(-1.8)
P 		98.2
(-0.7)
P 		36.2
(-3)
P 		159
B 111
(-1.1)
P 		110.9
(-1.2)
P 		108.9
(-3)
P 		115.4
(3)
P 		7
C 213.2
(3)
P 		107.7
(-2)
P 		138.5
(-0.5)
P 		86.5
(-3)
P 		127
avr 173.1
(3) 		95.6
(-2) 		115.2
(-0.7) 		79.4
(-3) 		94

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 160
1 2 3 4 5 6 range
A 53.1
(-3)
P 		184.9
(3)
P 		76.1
(-2)
P 		74.4
(-2)
P 		144.9
(1.2)
P 		110.8
(-0.4)
P 		132
B 178.2
(1.8)
P 		132.5
(-0.4)
P 		84.6
(-2.6)
P 		75.4
(-3)
P 		160.5
(0.9)
P 		204.7
(3)
P 		129
C 175.5
(3)
P 		110.3
(-0)
P 		76.3
(-1.6)
P 		45.2
(-3)
P 		168.3
(2.7)
P 		161.1
(2.3)
P 		130
avr 135.6
(1.5) 		142.6
(2) 		79
(-2.1) 		65
(-3) 		157.9
(2.9) 		158.9
(3) 		94
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173886_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25676
Sequence Type Exemplar sequence
Representative Public ID C30483 NCBI
Target Description C30483_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=Y45G5AM.A /5_PRIME_EXT_DB=WormBase Gene ID /GB=C30483 /WB_GENE_ID=Y45G5AM.A /WP=CE26398 /CHR=5 /FEA=Genomic Cluster /DEF=(ST.LOUIS) protein_id:AAG23358.1; C.elegans cDNA clone yk254c10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071762(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071762 NCBI Caenorhabditis elegans Y45G5AM.9a (Y45G5AM.9) mRNA, complete cds. 11/11 None
Y45G5AM.9a ENSEMBL cdna:known chromosome:CEL140:V:4181154:4191322:-1 gene:Y45G5AM.9 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
178820 2 1 NM_071762 173886_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4181219-4184890(-) 75.83 97.63
Public Domain and Genome References
Ensembl Y45G5AM.9
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504163 Y45G5AM.9a [Caenorhabditis elegans] gb|AAG23358.2| Hypothetical protein Y45G5AM.9a [Caenorhabditis elegans] 0.0
blast NP_504165 Y45G5AM.9b [Caenorhabditis elegans] gb|AAO25978.1| Hypothetical protein Y45G5AM.9b [Caenorhabditis elegans] 1.0E-154
blast CAE58325 Hypothetical protein CBG01438 [Caenorhabditis briggsae] 1.0E-63
Sequence
Target Sequence 
>C. ELEGANS:173886_AT
aatcttccacactagaacttttatttcatcccttaatcatcatcatttcctattgcaacc
ggttattttttctaattctttcccccactttcagcagcatatccgactagaattagtgtt
ttttcttcagttctcgattattatttagcatcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATCTTCCACACTAGAACTTTTATT 570 169 1508 Antisense
AACTTTTATTTCATCCCTTAATCAT 686 137 1523 Antisense
TCATCCCTTAATCATCATCATTTCC 491 621 1533 Antisense
TCATCATTTCCTATTGCAACCGGTT 215 619 1547 Antisense
CATTTCCTATTGCAACCGGTTATTT 661 213 1551 Antisense
CCACTTTCAGCAGCATATCCGACTA 542 275 1592 Antisense
AGCAGCATATCCGACTAGAATTAGT 469 77 1600 Antisense
ATTAGTGTTTTTTCTTCAGTTCTCG 547 13 1619 Antisense
GTGTTTTTTCTTCAGTTCTCGATTA 80 487 1623 Antisense
TTTTCTTCAGTTCTCGATTATTATT 240 677 1628 Antisense
GTTCTCGATTATTATTTAGCATCAA 428 443 1637 Antisense
Sequence Source Affymetrix Proprietary Database