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[173885_s_at]

Description CEK091AXR_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=Y94H6A.B /5_PRIME_EXT_DB=WormBase Gene ID /GB=D72179 /WB_GENE_ID=Y94H6A.B /WP=CE25629 /CHR=4 /FEA=Genomic Cluster /DEF=(ST.LOUIS) protein_id:AAF60888.1; C.elegans cDNA clone yk91a10 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 90      6grp_high1_10_10 > 91      4grp_highest_8_8 > 17      4grp_high_8_8 > 61      6grp_highest_nonorm > 65      6grp_total > 93      4grp_total > 59      6grp_high1_sub > 05      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 765
1 2 3 4 range
A 1362.6
(0.6)
P 		1263.2
(-0.2)
P 		1669.2
(3)
P 		904.6
(-3)
P 		765
B 1131.2
(-1.3)
P 		1495.2
(2.5)
P 		1540.6
(3)
P 		963.3
(-3)
P 		577
C 1255.5
(-0.1)
P 		1481.7
(2.8)
P 		1496.8
(3)
P 		1030.7
(-3)
P 		466
avr 1249.8
(-0.2) 		1413.4
(1.5) 		1568.9
(3) 		966.2
(-3) 		603

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 784
1 2 3 4 5 6 range
A 1080.9
(-2.7)
P 		1316.6
(1)
P 		1060.7
(-3)
P 		1326.5
(1.1)
P 		1216
(-0.6)
P 		1448.2
(3)
P 		388
B 1219
(1.6)
P 		1058.5
(-3)
P 		1270.1
(3)
P 		1123.2
(-1.2)
P 		1227
(1.8)
P 		1160.4
(-0.1)
P 		212
C 1575
(1.6)
P 		1107.6
(-2)
P 		1479.4
(0.9)
P 		1086.3
(-2.2)
P 		1759.6
(3)
P 		975.9
(-3)
P 		784
avr 1291.6
(0.3) 		1160.9
(-3) 		1270.1
(-0.3) 		1178.7
(-2.6) 		1400.9
(3) 		1194.8
(-2.2) 		240
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 389
1 2 3 4 range
A 496.1
(3)
P 		274.2
(-0.7)
P 		436.4
(2)
P 		132.4
(-3)
P 		364
B 360.7
(2.7)
P 		369.3
(3)
P 		357
(2.6)
P 		205.3
(-3)
P 		164
C 415.6
(1.2)
P 		426
(1.3)
P 		521.7
(3)
P 		173.8
(-3)
P 		348
avr 424.1
(2.7) 		356.5
(1.2) 		438.4
(3) 		170.5
(-3) 		268

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 385
1 2 3 4 5 6 range
A 199.3
(-3)
P 		468.3
(3)
P 		231
(-2.3)
P 		336.4
(0.1)
P 		366.9
(0.7)
P 		352.6
(0.4)
P 		269
B 424.2
(0.8)
P 		352.3
(-1.4)
P 		308.4
(-2.7)
P 		297.5
(-3)
P 		498.5
(3)
P 		432.7
(1)
P 		201
C 583.8
(3)
P 		338
(-1)
P 		376.5
(-0.4)
P 		218.4
(-3)
P 		569.4
(2.8)
P 		326.7
(-1.2)
P 		365
avr 402.4
(0.7) 		386.2
(0.2) 		305.3
(-2.3) 		284.1
(-3) 		478.3
(3) 		370.7
(-0.3) 		194
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173885_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25053
Sequence Type Exemplar sequence
Representative Public ID CEK091AXR NCBI
Target Description CEK091AXR_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=Y94H6A.B /5_PRIME_EXT_DB=WormBase Gene ID /GB=D72179 /WB_GENE_ID=Y94H6A.B /WP=CE25629 /CHR=4 /FEA=Genomic Cluster /DEF=(ST.LOUIS) protein_id:AAF60888.1; C.elegans cDNA clone yk91a10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028420(11), NM_001028419(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028420 NCBI Caenorhabditis elegans Y94H6A.9b (Y94H6A.9) mRNA, complete cds. 11/11 None
NM_001028419 NCBI Caenorhabditis elegans Y94H6A.9a (Y94H6A.9) mRNA, complete cds. 11/11 None
SNAP00000003284 ENSEMBL cdna:SNAP chromosome:CEL140:IV:2716782:2725816:-1 10/11 None
GENEFINDER00000003291 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:2720562:2726318:-1 11/11 None
Y94H6A.9b ENSEMBL cdna:known chromosome:CEL140:IV:2720320:2725857:-1 gene:Y94H6A.9 11/11 None
Y94H6A.9a ENSEMBL cdna:known chromosome:CEL140:IV:2720562:2725816:-1 gene:Y94H6A.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:2720375-2723106(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y94H6A.9
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60887 Hypothetical protein Y94H6A.9a [Caenorhabditis elegans] ref|NP_001023590.1| Y94H6A.9a [Caenorhabditis elegans] 1.0E-147
blast AAF60887 Hypothetical protein Y94H6A.9a [Caenorhabditis elegans] ref|NP_001023590.1| Y94H6A.9a [Caenorhabditis elegans] 1.0E-144
blast AAF60887 Hypothetical protein Y94H6A.9a [Caenorhabditis elegans] ref|NP_001023590.1| Y94H6A.9a [Caenorhabditis elegans] 1.0E-141
blast AAF60887 Hypothetical protein Y94H6A.9a [Caenorhabditis elegans] ref|NP_001023590.1| Y94H6A.9a [Caenorhabditis elegans] 1.0E-100
blast AAP31418 Hypothetical protein Y94H6A.9b [Caenorhabditis elegans] ref|NP_001023591.1| Y94H6A.9b [Caenorhabditis elegans] 1.0E-100
blast AAP31418 Hypothetical protein Y94H6A.9b [Caenorhabditis elegans] ref|NP_001023591.1| Y94H6A.9b [Caenorhabditis elegans] 2.0E-99
Protein Domains
Database ID Description E-Value
Pfam IPR001012 EMBL-EBI UBX domain 3.6E-17
Pfam IPR001012 EMBL-EBI UBX domain 3.6E-17
Pfam IPR001012 EMBL-EBI UBX domain 1.3E-14
Pfam IPR007763 EMBL-EBI NADH:ubiquinone oxidoreductase 17.2 kD subunit 5.6E-57
Pfam IPR001012 EMBL-EBI UBX domain 3.6E-17
Sequence
Target Sequence 
>C. ELEGANS:173885_S_AT
gaagccattcggcggtagtggagtccgtttgggaaatgttgtcccaacagttttgggaca
atcatcgtcgtctgccaccactgctgggacatcatctgcaacaactgatcataacccgga
tcatactgctgaaaatgaggcaaaacagctggaagatgctaagaaggagctgagcaccaa
tatgaatgagccaacgactaagatccaaatccgtctgccaaacaatcagcgtctcgtcgg
tatttttaatcattctcacacacttgaagcagttcgtacattcatttgcagcgcccgccc
agatatgatctacgctccattccaaatgatggctgcctaccctccaaaaccatttgaaga
cgaatcacagactctgaaggatgcaaatgtgctcaattcggtcgtcgccgtgaaaatctt
gcccac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGCCATTCGGCGGTAGTGGAGTC 184 345 16 Antisense
TTGGGACAATCATCGTCGTCTGCCA 449 709 68 Antisense
ATCATAACCCGGATCATACTGCTGA 531 27 123 Antisense
ATCCAAATCCGTCTGCCAAACAATC 109 41 218 Antisense
TCTGCCAAACAATCAGCGTCTCGTC 288 609 229 Antisense
GCGTCTCGTCGGTATTTTTAATCAT 604 291 244 Antisense
ATCATTCTCACACACTTGAAGCAGT 406 31 264 Antisense
GAAGCAGTTCGTACATTCATTTGCA 691 341 281 Antisense
CCAGATATGATCTACGCTCCATTCC 202 273 314 Antisense
TTCCAAATGATGGCTGCCTACCCTC 444 701 335 Antisense
TCGTCGCCGTGAAAATCTTGCCCAC 194 605 417 Antisense
Sequence Source Affymetrix Proprietary Database