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[173883_s_at] mitochondrial ribosomal protein S11 like

Description C70336 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=W04D2.5 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C70336 /WB_GENE_ID=W04D2.5 /WP=CE06542 /CHR=5 /FEA=Genomic Cluster /DEF=mitochondrial ribosomal protein S11 like; C.elegans cDNA clone yk386c1 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 01      6grp_high1_10_10 > 0      4grp_highest_8_8 > 23      4grp_high_8_8 > 05      6grp_highest_nonorm > 46      6grp_total > 60      4grp_total > 03      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7350
1 2 3 4 range
A 2345.3
(-2.4)
P 		2035
(-2.7)
P 		1660.5
(-3)
P 		9010.7
(3)
P 		7350
B 2519.1
(-2.2)
P 		1850.6
(-2.9)
P 		1694.6
(-3)
P 		8275.3
(3)
P 		6581
C 2353.5
(-2.6)
P 		1868.7
(-3)
P 		1904.8
(-3)
P 		8544
(3)
P 		6675
avr 2406
(-2.4) 		1918.1
(-2.9) 		1753.3
(-3) 		8610
(3) 		6857

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1301
1 2 3 4 5 6 range
A 3057
(3)
P 		2352.3
(-1.8)
P 		2974.7
(2.4)
P 		2875.7
(1.8)
P 		2176.4
(-3)
P 		2538.3
(-0.5)
P 		881
B 2697.5
(-0.9)
P 		2583.9
(-2.4)
P 		2676.8
(-1.2)
P 		2995.7
(3)
P 		2539.4
(-3)
P 		2718.1
(-0.7)
P 		456
C 3237.8
(1.5)
P 		2511.5
(-3)
P 		2665.2
(-2)
P 		3477.3
(3)
P 		2565
(-2.7)
P 		2954.4
(-0.2)
P 		966
avr 2997.4
(2) 		2482.6
(-2.5) 		2772.2
(0) 		3116.2
(3) 		2426.9
(-3) 		2736.9
(-0.3) 		689
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1371
1 2 3 4 range
A 853.9
(-0.2)
P 		441.8
(-2.9)
P 		434.1
(-3)
P 		1319
(3)
P 		885
B 803.3
(-1.2)
P 		457.1
(-2.7)
P 		392.7
(-3)
P 		1763.5
(3)
P 		1371
C 779.1
(-1.4)
P 		537.3
(-3)
P 		663.9
(-2.2)
P 		1440.6
(3)
P 		903
avr 812.1
(-1.1) 		478.7
(-3) 		496.9
(-2.9) 		1507.7
(3) 		1029

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 637
1 2 3 4 5 6 range
A 563.5
(-3)
P 		836.6
(3)
P 		647.8
(-1.1)
P 		729.3
(0.6)
P 		656.7
(-1)
P 		618
(-1.8)
P 		273
B 938.6
(1.5)
P 		860.1
(0.3)
P 		650
(-3)
P 		793.5
(-0.7)
P 		1031.7
(3)
P 		1013.6
(2.7)
P 		382
C 1200.1
(3)
P 		766.3
(-2)
P 		678.3
(-3)
P 		699.3
(-2.8)
P 		830
(-1.3)
P 		989
(0.6)
P 		522
avr 900.7
(3) 		821
(1) 		658.7
(-3) 		740.7
(-1) 		839.5
(1.5) 		873.5
(2.3) 		242
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173883_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25556
Sequence Type Exemplar sequence
Representative Public ID C70336 NCBI
Target Description C70336 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=W04D2.5 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C70336 /WB_GENE_ID=W04D2.5 /WP=CE06542 /CHR=5 /FEA=Genomic Cluster /DEF=mitochondrial ribosomal protein S11 like; C.elegans cDNA clone yk386c1 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073730(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073730 NCBI Caenorhabditis elegans W04D2.5 (W04D2.5) mRNA, complete cds. 11/11 None
SNAP00000021797 ENSEMBL cdna:SNAP chromosome:CEL140:V:12495963:12497210:-1 11/11 None
GENEFINDER00000021801 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12495963:12497210:-1 11/11 None
W04D2.5.1 ENSEMBL cdna:known chromosome:CEL140:V:12495837:12497210:-1 gene:W04D2.5 11/11 None
W04D2.5.2 ENSEMBL cdna:known chromosome:CEL140:V:12495843:12497212:-1 gene:W04D2.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12495865-12497211(-) 100.0 100.0
Public Domain and Genome References
Gene Title mitochondrial ribosomal protein S11 like
Ensembl W04D2.5
Entrez Gene 179711 Entrez gene
SwissProt Q23155 EMBL-EBI
WormBase CE06542 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFA.21285.1.S1_AT similar to mitochondrial ribosomal protein S11 isoform a cfa
CANINE_2:CFA.21285.1.S1_S_AT similar to mitochondrial ribosomal protein S11 isoform a cfa
DROSOPHILA_2:1628902_AT mitochondrial ribosomal protein S11 dm
DROSOPHILA_2:1625994_A_AT mitochondrial ribosomal protein S11 dm
DROSGENOME1:150046_AT mitochondrial ribosomal protein S11 dm
CHICKEN:GGA.2718.2.S1_S_AT mitochondrial ribosomal protein S11 gga
HG-U133_PLUS_2:211595_S_AT mitochondrial ribosomal protein S11 hs
HG-U133A:211595_S_AT mitochondrial ribosomal protein S11 hs
HG-U133A_2:211595_S_AT mitochondrial ribosomal protein S11 hs
HG-U133_PLUS_2:215919_S_AT mitochondrial ribosomal protein S11 hs
HG-U133A_2:215919_S_AT mitochondrial ribosomal protein S11 hs
HG-U133A:215919_S_AT mitochondrial ribosomal protein S11 hs
HU35KSUBA:AA471252_AT mitochondrial ribosomal protein S11 hs
HU35KSUBD:RC_AA235019_AT mitochondrial ribosomal protein S11 hs
U133_X3P:G13620888_3P_S_AT mitochondrial ribosomal protein S11 hs
U133_X3P:HS.111286.2.S1_3P_X_AT mitochondrial ribosomal protein S11 hs
HG-U95AV2:39004_AT mitochondrial ribosomal protein S11 hs
MU11KSUBB:Z31203_S_AT mitochondrial ribosomal protein S11 mm
MG-U74AV2:97884_AT mitochondrial ribosomal protein S11 mm
MG-U74CV2:169810_AT mitochondrial ribosomal protein S11 mm
MOE430A:1455233_AT mitochondrial ribosomal protein S11 mm
MOUSE430A_2:1455233_AT mitochondrial ribosomal protein S11 mm
MOUSE430_2:1455233_AT mitochondrial ribosomal protein S11 mm
MOE430A:1460195_AT mitochondrial ribosomal protein S11 mm
MOUSE430A_2:1460195_AT mitochondrial ribosomal protein S11 mm
MOUSE430_2:1460195_AT mitochondrial ribosomal protein S11 mm
MG-U74BV2:164755_I_AT Mitochondrial ribosomal protein S11, mRNA (cDNA clone MGC:40874 IMAGE:5370270) mm
MU19KSUBA:TC21846_AT Mitochondrial ribosomal protein S11, mRNA (cDNA clone MGC:40874 IMAGE:5370270) mm
MU19KSUBA:TC21846_G_AT Mitochondrial ribosomal protein S11, mRNA (cDNA clone MGC:40874 IMAGE:5370270) mm
MU19KSUBB:TC31396_AT Mitochondrial ribosomal protein S11, mRNA (cDNA clone MGC:40874 IMAGE:5370270) mm
RG-U34A:RC_AA859788_AT similar to mitochondrial ribosomal protein S11 rn
RAE230A:1372215_AT similar to mitochondrial ribosomal protein S11 rn
RAT230_2:1372215_AT similar to mitochondrial ribosomal protein S11 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6412 protein biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
5840 ribosome inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3735 structural constituent of ribosome inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA99938 Hypothetical protein W04D2.5 [Caenorhabditis elegans] ref|NP_506131.1| W04D2.5 [Caenorhabditis elegans] 1.0E-112
blast CAA99938 Hypothetical protein W04D2.5 [Caenorhabditis elegans] ref|NP_506131.1| W04D2.5 [Caenorhabditis elegans] 1.0E-111
blast CAE75499 Hypothetical protein CBG23508 [Caenorhabditis briggsae] 1.0E-102
blast CAE75499 Hypothetical protein CBG23508 [Caenorhabditis briggsae] 1.0E-101
Protein Domains
Database ID Description E-Value
Pfam IPR001971 EMBL-EBI Ribosomal protein S11 1.3E-17
Pfam IPR001971 EMBL-EBI Ribosomal protein S11 1.9E-16
Sequence
Target Sequence 
>C. ELEGANS:173883_S_AT
atacttcatctatagacgctcgccttccgactgctgagacattgaaacaacaatttgatg
gagttgcgtatcacgagctgccattggtttatattcgtgctagcaaaaataacacattag
tcactgttatggataataagaacgaagtaatcacatcaacgtcatgccggctggagggat
tcaaaaatgccagaaagaagacaacaatcgccggtcagacaactggagttgcagccggac
agagacttgtcagaagaggaattcgaactgttcgagtacaagttaaaggtcttggacccg
gacgtatgacatgtgtcaaaggtctcacagttgctggtgttcatgttgtcagcatctccg
atcacactccattgtgcgaacttggaccacggccacgcaagattcgtcgtat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATACTTCATCTATAGACGCTCGCCT 674 23 225 Antisense
GCCTTCCGACTGCTGAGACATTGAA 210 281 246 Antisense
TGGAGTTGCGTATCACGAGCTGCCA 562 549 283 Antisense
GCTGCCATTGGTTTATATTCGTGCT 63 299 301 Antisense
AACGTCATGCCGGCTGGAGGGATTC 581 143 382 Antisense
ACAACAATCGCCGGTCAGACAACTG 6 113 425 Antisense
AAGGTCTCACAGTTGCTGGTGTTCA 120 161 543 Antisense
TTCATGTTGTCAGCATCTCCGATCA 50 689 564 Antisense
CTCCGATCACACTCCATTGTGCGAA 225 235 580 Antisense
CATTGTGCGAACTTGGACCACGGCC 84 215 594 Antisense
CACGGCCACGCAAGATTCGTCGTAT 394 195 612 Antisense
Sequence Source Affymetrix Proprietary Database