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[173877_s_at] BTB (also known as BR-C/Ttk) domain.

Description C50301 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F52H3.3 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C50301 /WB_GENE_ID=F52H3.3 /WP=CE03399 /CHR=2 /FEA=Genomic Cluster /DEF=BTB (also known as BR-C-Ttk) domain.; C.elegans cDNA clone yk480a7 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 0      6grp_high1_10_10 > 70      4grp_highest_8_8 > 23      4grp_high_8_8 > 05      6grp_highest_nonorm > 75      6grp_total > 90      4grp_total > 03      6grp_cgc > 96      6grp_high1_sub > 04      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3344
1 2 3 4 range
A 1010.9
(-2.4)
P 		856.4
(-2.7)
P 		667
(-3)
P 		4006.9
(3)
P 		3340
B 1104.2
(-2.1)
P 		769.5
(-2.8)
P 		663.4
(-3)
P 		3530.8
(3)
P 		2867
C 1074.9
(-2.3)
P 		864.9
(-2.8)
P 		754.4
(-3)
P 		3451.3
(3)
P 		2697
avr 1063.3
(-2.3) 		830.3
(-2.7) 		694.9
(-3) 		3663
(3) 		2968

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 524
1 2 3 4 5 6 range
A 1042.1
(0.9)
P 		778.5
(-2.1)
P 		990.7
(0.3)
P 		1225
(3)
P 		951.2
(-0.1)
P 		700.9
(-3)
P 		524
B 1015.7
(0.9)
P 		807
(-2)
P 		802.7
(-2.1)
P 		1169.8
(3)
P 		1034.9
(1.1)
P 		738.6
(-3)
P 		431
C 848.9
(-1.3)
P 		895.3
(-0.5)
P 		750.8
(-3)
P 		1103.3
(3)
P 		809.6
(-2)
P 		755
(-2.9)
P 		353
avr 968.9
(0.3) 		826.9
(-1.7) 		848.1
(-1.4) 		1166
(3) 		931.9
(-0.2) 		731.5
(-3) 		435
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 599
1 2 3 4 range
A 368.1
(-0.2)
P 		185.9
(-2.8)
P 		174.4
(-3)
P 		586.5
(3)
P 		412
B 352.1
(-1)
P 		190
(-2.6)
P 		153.7
(-3)
P 		752.4
(3)
P 		599
C 355.8
(-1.1)
P 		248.7
(-3)
P 		262.9
(-2.7)
P 		581.9
(3)
P 		333
avr 358.7
(-0.8) 		208.2
(-2.8) 		197
(-3) 		640.3
(3) 		443

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 250
1 2 3 4 5 6 range
A 192.1
(-2.1)
P 		276.9
(1.6)
P 		215.8
(-1.1)
P 		310.7
(3)
P 		287
(2)
P 		170.6
(-3)
P 		140
B 353.4
(1.2)
P 		268.6
(-1)
P 		194.9
(-3)
P 		309.8
(0.1)
P 		420.5
(3)
P 		275.4
(-0.9)
P 		226
C 314.6
(3)
P 		273.2
(1)
P 		191.1
(-3)
P 		221.9
(-1.5)
P 		262
(0.4)
P 		252.8
(-0)
P 		124
avr 286.7
(1.2) 		272.9
(0.5) 		200.6
(-3) 		280.8
(0.9) 		323.2
(3) 		232.9
(-1.4) 		123
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173877_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.23442
Sequence Type Exemplar sequence
Representative Public ID C50301 NCBI
Target Description C50301 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F52H3.3 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C50301 /WB_GENE_ID=F52H3.3 /WP=CE03399 /CHR=2 /FEA=Genomic Cluster /DEF=BTB (also known as BR-C-Ttk) domain.; C.elegans cDNA clone yk480a7 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063771(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063771 NCBI Caenorhabditis elegans F52H3.3 (F52H3.3) mRNA, complete cds. 11/11 None
SNAP00000021628 ENSEMBL cdna:SNAP chromosome:CEL140:II:10042971:10044993:-1 11/11 None
GENEFINDER00000021634 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:10042971:10045014:-1 11/11 None
F52H3.3 ENSEMBL cdna:known chromosome:CEL140:II:10042914:10045100:-1 gene:F52H3.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10042968-10044991(-) 100.0 100.0
Public Domain and Genome References
Gene Title BTB (also known as BR-C/Ttk) domain.
Gene Symbol bath-38
Ensembl F52H3.3
Entrez Gene 174567 Entrez gene
SwissProt Q20681 EMBL-EBI
WormBase CE03399 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA91323 Hypothetical protein F52H3.3 [Caenorhabditis elegans] ref|NP_496172.1| F52H3.3 [Caenorhabditis elegans] 0.0
blast CAE59356 Hypothetical protein CBG02705 [Caenorhabditis briggsae] 1.0E-165
blast CAE59356 Hypothetical protein CBG02705 [Caenorhabditis briggsae] 1.0E-143
blast CAA21761 Hypothetical protein Y75B12B.4 [Caenorhabditis elegans] ref|NP_506750.1| Y75B12B.4 [Caenorhabditis elegans] 8.0E-42
Protein Domains
Database ID Description E-Value
Pfam IPR002083 EMBL-EBI MATH 3.4E-29
Pfam IPR000210 EMBL-EBI BTB/POZ domain 1.7E-32
Pfam IPR002083 EMBL-EBI MATH 6.9E-19
Pfam IPR000210 EMBL-EBI BTB/POZ domain 1.7E-32
Pfam IPR002083 EMBL-EBI MATH 3.4E-29
Pfam IPR000210 EMBL-EBI BTB/POZ domain 1.7E-32
Sequence
Target Sequence 
>C. ELEGANS:173877_S_AT
tccgtctttcatggcctgggaagatgtgaataattcaaattacgtgagaaacgaaatggt
gactgtcactgcacgagttgttgttcaaaaagtgcttggtgtcaggaacgtaccgaaata
tgattttggagcaatgcagacgaacatttgtgatatgacattggttatcaacaaacagaa
attgtttgtaaataaggcgtatcttgctctctactcgccagtcttttatgccatgttctt
ctcaaatttccaagaacgggaaaaaacacaagtagagctggaagatgtggtcctcgaaga
attccgtgagttgcttcacgtcatctatccatgccacaagccaatcacatcggataacgt
ggaatatttgttggaactcggagataaatatgaaatacaatatgtgatggatgagtgtga
acgatttctcgttggatccgaggatattctacaaattaccaagttgatgtgggctgatca
atacttgttggcaaagcttcaggacagctgccttcgaaacatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCGTCTTTCATGGCCTGGGAAGAT 333 595 547 Antisense
GACTGTCACTGCACGAGTTGTTGTT 550 375 607 Antisense
GTGCTTGGTGTCAGGAACGTACCGA 479 417 638 Antisense
AATAAGGCGTATCTTGCTCTCTACT 380 171 737 Antisense
GCCAGTCTTTTATGCCATGTTCTTC 115 281 763 Antisense
TGCCATGTTCTTCTCAAATTTCCAA 43 587 775 Antisense
GATGTGGTCCTCGAAGAATTCCGTG 109 409 830 Antisense
GTGAGTTGCTTCACGTCATCTATCC 626 483 852 Antisense
CATCTATCCATGCCACAAGCCAATC 404 213 868 Antisense
GTGGGCTGATCAATACTTGTTGGCA 227 489 1015 Antisense
TCAGGACAGCTGCCTTCGAAACATC 498 623 1045 Antisense
Sequence Source Affymetrix Proprietary Database