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[173869_at] protein-tyrosine phosphatase like

Description CEK025A7R_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=C18E9.7 /5_PRIME_EXT_DB=WormBase Gene ID /GB=D33019 /WB_GENE_ID=C18E9.7 /WP=CE05299 /CHR=2 /FEA=Genomic Cluster /DEF=protein-tyrosine phosphatase like; C.elegans cDNA clone yk25a7 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 53      6grp_high1_10_10 > 34      6grp_highest_nonorm > 90      6grp_total > 0      4grp_total > 48      6grp_highest_sub > 02      6grp_total_sub > Hat      6grp_high1_sub > 02      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 301
1 2 3 4 range
A 48
(-2.7)
A 		182.5
(0.4)
P 		291.3
(3)
P 		35.7
(-3)
A 		256
B 27.1
(-3)
A 		255.3
(2.3)
P 		286.8
(3)
P 		28.1
(-3)
A 		260
C 34.5
(-3)
A 		221.4
(0.8)
P 		328
(3)
P 		77.2
(-2.1)
P 		294
avr 36.5
(-3) 		219.7
(1.1) 		302
(3) 		47
(-2.8) 		266

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 192
1 2 3 4 5 6 range
A 166.3
(-0.4)
P 		205.9
(1.3)
P 		104.5
(-3)
P 		148.8
(-1.1)
P 		246.3
(3)
P 		150.3
(-1.1)
P 		142
B 200.8
(0.9)
P 		255.8
(3)
P 		191
(0.6)
P 		222
(1.7)
P 		97
(-3)
P 		157.3
(-0.7)
P 		159
C 126.4
(-0.6)
P 		214.2
(2.7)
P 		63.7
(-3)
P 		128.9
(-0.5)
P 		124.6
(-0.7)
P 		221.1
(3)
P 		157
avr 164.5
(-0.5) 		225.3
(3) 		119.7
(-3) 		166.6
(-0.3) 		156
(-0.9) 		176.2
(0.2) 		106
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 109
1 2 3 4 range
A 17.5
(-2)
A 		39.6
(-0.1)
P 		76.2
(3)
P 		5.2
(-3)
A 		71
B 8.6
(-2.7)
A 		63
(2.7)
P 		66.4
(3)
P 		6
(-3)
A 		60
C 11.4
(-3)
A 		63.6
(0)
P 		114.3
(3)
P 		13
(-2.9)
P 		103
avr 12.5
(-2.7) 		55.4
(0.7) 		85.6
(3) 		8.1
(-3) 		78

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 30.7
(-2.1)
P 		73.2
(2.9)
P 		22.8
(-3)
P 		37.7
(-1.3)
P 		74.3
(3)
P 		36.6
(-1.4)
P 		52
B 69.9
(1)
P 		85.2
(3)
P 		46.4
(-2.1)
P 		58.8
(-0.5)
P 		39.4
(-3)
P 		58.6
(-0.5)
P 		46
C 46.9
(0.2)
P 		65.4
(2.1)
P 		16.2
(-3)
P 		25.9
(-2)
P 		40.3
(-0.5)
P 		74
(3)
P 		58
avr 49.2
(-0.3) 		74.6
(3) 		28.5
(-3) 		40.8
(-1.4) 		51.3
(-0) 		56.4
(0.6) 		46
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173869_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.23363
Sequence Type Exemplar sequence
Representative Public ID CEK025A7R NCBI
Target Description CEK025A7R_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=C18E9.7 /5_PRIME_EXT_DB=WormBase Gene ID /GB=D33019 /WB_GENE_ID=C18E9.7 /WP=CE05299 /CHR=2 /FEA=Genomic Cluster /DEF=protein-tyrosine phosphatase like; C.elegans cDNA clone yk25a7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063512(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063512 NCBI Caenorhabditis elegans C18E9.7 (C18E9.7) mRNA, complete cds. 11/11 None
C18E9.7 ENSEMBL cdna:known chromosome:CEL140:II:8978489:8982587:-1 gene:C18E9.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8978507-8982585(-) 97.64 100.0
Public Domain and Genome References
Gene Title protein-tyrosine phosphatase like
Ensembl C18E9.7
Entrez Gene 174432 Entrez gene
SwissProt Q18096 EMBL-EBI
WormBase CE05299 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93856 Hypothetical protein C18E9.7 [Caenorhabditis elegans] ref|NP_495913.1| C18E9.7 [Caenorhabditis elegans] 0.0
blast CAE59774 Hypothetical protein CBG03226 [Caenorhabditis briggsae] 0.0
blast XP_394130 PREDICTED: similar to ENSANGP00000013354 [Apis mellifera] 1.0E-16
Protein Domains
Database ID Description E-Value
Pfam IPR003961 EMBL-EBI Fibronectin, type III 1.3E-6
Pfam IPR003961 EMBL-EBI Fibronectin, type III 6.9E-6
Sequence
Target Sequence 
>C. ELEGANS:173869_AT
cctttccccttcaaatcagtattattttatatcatctgacattttccctaacaattttgt
caagaataacttatctgtgcactccgagtgattaacgtagtccggccttcaaccttatct
gtttcggtctttcataattttatttgctcccggaccatctgcttatgggtttttttgtct
atgttttcacacctatttctcttccctacttgtcttttctgttttctttttattttgaat
tgccaacttgcatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCTTTCCCCTTCAAATCAGTATTAT 57 269 2612 Antisense
ATATCATCTGACATTTTCCCTAACA 427 19 2640 Antisense
TAACTTATCTGTGCACTCCGAGTGA 512 637 2678 Antisense
GAGTGATTAACGTAGTCCGGCCTTC 385 373 2697 Antisense
GCCTTCAACCTTATCTGTTTCGGTC 302 269 2716 Antisense
ATCTGTTTCGGTCTTTCATAATTTT 392 21 2728 Antisense
TCATAATTTTATTTGCTCCCGGACC 131 599 2743 Antisense
TCCCGGACCATCTGCTTATGGGTTT 354 587 2759 Antisense
GCTTATGGGTTTTTTTGTCTATGTT 186 305 2772 Antisense
GTCTATGTTTTCACACCTATTTCTC 628 469 2788 Antisense
TTATTTTGAATTGCCAACTTGCATT 639 677 2841 Antisense
Sequence Source Affymetrix Proprietary Database