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[173866_s_at] BTB (also known as BR-C/Ttk) domain.

Description C58763_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F27C8.5 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C58763 /WB_GENE_ID=F27C8.5 /WP=CE03270 /CHR=4 /FEA=Genomic Cluster /DEF=BTB (also known as BR-C-Ttk) domain.; C.elegans cDNA clone yk377d4 : 3prime end, single read.
Cluster 6grp_total > 87      4grp_total > 27      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 12.2
(-2)
A 		65.4
(3)
A 		2
(-3)
A 		36.1
(0.2)
A 		63
B 11.6
(-1.9)
A 		45.5
(3)
A 		3.7
(-3)
A 		39.8
(2.2)
A 		42
C 46.2
(1.5)
A 		1.9
(-3)
A 		38
(0.7)
A 		60.9
(3)
A 		59
avr 23.3
(-1.3) 		37.6
(1.5) 		14.6
(-3) 		45.6
(3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 149
1 2 3 4 5 6 range
A 37
(-2.6)
A 		31.2
(-3)
A 		31.9
(-2.9)
A 		31.8
(-3)
A 		39.1
(-2.4)
A 		109.1
(3)
P 		78
B 3
(-3)
A 		27.3
(-2)
A 		7.1
(-2.8)
A 		24.6
(-2.1)
A 		70.3
(-0.3)
P 		152.1
(3)
P 		149
C 16.2
(-2.4)
A 		31.9
(-1.7)
A 		3.2
(-3)
A 		68.8
(-0.1)
A 		101.3
(1.3)
P 		139.7
(3)
P 		137
avr 18.7
(-2.8) 		30.1
(-2.2) 		14.1
(-3) 		41.7
(-1.6) 		70.2
(-0.2) 		133.6
(3) 		120
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 4.4
(-1.3)
A 		14.2
(3)
A 		0.5
(-3)
A 		5.3
(-0.9)
A 		14
B 3.7
(-1.3)
A 		11.2
(3)
A 		0.8
(-3)
A 		8.5
(1.4)
A 		10
C 15.3
(3)
A 		0.6
(-3)
A 		13.2
(2.1)
A 		10.3
(1)
A 		15
avr 7.8
(1.6) 		8.7
(3) 		4.8
(-3) 		8
(1.9) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 6.8
(-3)
A 		11.1
(-1.7)
A 		6.9
(-3)
A 		8.1
(-2.6)
A 		11.8
(-1.5)
A 		26.6
(3)
P 		20
B 1.1
(-3)
A 		9.1
(-2.1)
A 		1.7
(-2.9)
A 		6.5
(-2.4)
A 		28.6
(-0)
P 		56.7
(3)
P 		56
C 6
(-2.3)
A 		9.7
(-1.8)
A 		0.8
(-3)
A 		13.8
(-1.3)
A 		32.8
(1.2)
P 		46.8
(3)
P 		46
avr 4.6
(-2.8) 		10
(-2) 		3.1
(-3) 		9.5
(-2) 		24.4
(0.2) 		43.4
(3) 		40
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173866_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.24542
Sequence Type Exemplar sequence
Representative Public ID C58763 NCBI
Target Description C58763_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F27C8.5 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C58763 /WB_GENE_ID=F27C8.5 /WP=CE03270 /CHR=4 /FEA=Genomic Cluster /DEF=BTB (also known as BR-C-Ttk) domain.; C.elegans cDNA clone yk377d4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069302(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069302 NCBI Caenorhabditis elegans F27C8.5 (F27C8.5) mRNA, complete cds. 11/11 None
SNAP00000022607 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9589849:9591918:-1 11/11 None
GENEFINDER00000022618 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9589849:9592692:-1 11/11 None
F27C8.5 ENSEMBL cdna:known chromosome:CEL140:IV:9589849:9592445:-1 gene:F27C8.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9589855-9592916(-) 96.94 100.0
Public Domain and Genome References
Gene Title BTB (also known as BR-C/Ttk) domain.
Ensembl F27C8.5
Entrez Gene 177792 Entrez gene
SwissProt Q19838 EMBL-EBI
WormBase CE28550 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA92463 Hypothetical protein F27C8.5 [Caenorhabditis elegans] ref|NP_501703.1| F27C8.5 [Caenorhabditis elegans] 0.0
blast CAE72763 Hypothetical protein CBG20013 [Caenorhabditis briggsae] 1.0E-162
blast CAE72763 Hypothetical protein CBG20013 [Caenorhabditis briggsae] 1.0E-161
blast CAE72763 Hypothetical protein CBG20013 [Caenorhabditis briggsae] 1.0E-132
blast CAE71091 Hypothetical protein CBG17941 [Caenorhabditis briggsae] 9.0E-17
Protein Domains
Database ID Description E-Value
Pfam IPR000210 EMBL-EBI BTB/POZ domain 2.8E-23
Pfam IPR000210 EMBL-EBI BTB/POZ domain 8.1E-13
Pfam IPR000210 EMBL-EBI BTB/POZ domain 2.8E-23
Sequence
Target Sequence 
>C. ELEGANS:173866_S_AT
gactccaactagaggaccaccaatgggattcagcagtgtccagtgcactgtcaaatatcg
aggatggtcgaaggatgtgatggagactaacaaggaaatgtataagcagtgcaagatgaa
tggaagatacattttatcggaagcacaaaccgaatcaaatgctccagtatttttgagacc
agctgttggcggaaaggtttccagctctcgtggcgctttgagcaacttgagcaactcgga
gcaaaacaaaaagtatggaagaggagtcactcaaagtttttctggacattctctgaacga
caatgaccccatgccaaaggaacatgatccaaaagtgcaaccatcagtgataatttcttg
tttgtcccttccaacaacttcgcccgtatctgtggttaaaccgaagatgactggggttaa
gaaaacggattcagagattatggagatcaatgcattgccatcttctttcaattccaattc
tttctacactgcaaaaactagcaatacttctggtcattcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACTCCAACTAGAGGACCACCAATG 582 363 1246 Antisense
TGGGATTCAGCAGTGTCCAGTGCAC 603 553 1269 Antisense
TGGCGGAAAGGTTTCCAGCTCTCGT 307 545 1432 Antisense
AGCTCTCGTGGCGCTTTGAGCAACT 11 81 1448 Antisense
CAAAGTTTTTCTGGACATTCTCTGA 248 193 1517 Antisense
TTCTCTGAACGACAATGACCCCATG 303 693 1534 Antisense
GTGATAATTTCTTGTTTGTCCCTTC 628 483 1592 Antisense
TCGCCCGTATCTGTGGTTAAACCGA 21 589 1625 Antisense
TCAATGCATTGCCATCTTCTTTCAA 573 633 1692 Antisense
TCAATTCCAATTCTTTCTACACTGC 430 633 1713 Antisense
ACTAGCAATACTTCTGGTCATTCGA 590 101 1742 Antisense
Sequence Source Affymetrix Proprietary Database