[Home] | [Total List]

[173862_s_at] xanthine dehydrogenase

Description AV203402 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F15E6.6 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV203402 /WB_GENE_ID=F15E6.6 /WP=CE27966 /CHR=4 /FEA=Genomic Cluster /DEF=xanthine dehydrogenase; Caenorhabditis elegans cDNA clone:yk576a1 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 13      6grp_high1_10_10 > 31      4grp_highest_8_8 > 36      4grp_high_8_8 > 0      6grp_highest_nonorm > 80      6grp_total > 43      4grp_total > 07      6grp_high1_sub > 03      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 107
1 2 3 4 range
A 231.5
(3)
P 		163.4
(-2.5)
P 		220.8
(2.1)
P 		156.9
(-3)
P 		75
B 161.8
(-0.1)
P 		171.5
(3)
P 		160.5
(-0.5)
P 		152.9
(-3)
P 		19
C 184.4
(1.1)
P 		124.5
(-3)
P 		151.6
(-1.2)
P 		213
(3)
P 		89
avr 192.6
(3) 		153.1
(-3) 		177.6
(0.7) 		174.3
(0.2) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 226
1 2 3 4 5 6 range
A 132.7
(-2.7)
P 		211.2
(-0.3)
P 		320.5
(3)
P 		162.6
(-1.8)
P 		124.2
(-3)
P 		145.1
(-2.4)
P 		196
B 210.8
(3)
P 		162.8
(-0.3)
P 		172.2
(0.4)
P 		123
(-3)
P 		122.9
(-3)
P 		122.8
(-3)
P 		88
C 304.4
(2.3)
P 		208.8
(-0.2)
P 		329.2
(3)
P 		102.8
(-3)
P 		144.3
(-1.9)
P 		107.8
(-2.9)
P 		226
avr 216
(0.7) 		194.3
(-0.2) 		274
(3) 		129.5
(-2.8) 		130.5
(-2.8) 		125.2
(-3) 		149
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 84.3
(3)
P 		35.5
(-1.8)
P 		57.7
(0.4)
P 		23
(-3)
P 		61
B 51.6
(3)
P 		42.4
(0.1)
P 		37.2
(-1.5)
P 		32.6
(-3)
P 		19
C 61.1
(3)
P 		35.8
(-3)
P 		52.8
(1)
P 		35.9
(-3)
P 		25
avr 65.7
(3) 		37.9
(-1.7) 		49.2
(0.2) 		30.5
(-3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 92
1 2 3 4 5 6 range
A 24.5
(-3)
P 		75.1
(3)
P 		69.8
(2.4)
P 		41.2
(-1)
P 		37.5
(-1.5)
P 		35.3
(-1.7)
P 		51
B 73.3
(3)
P 		54.2
(0.2)
P 		41.8
(-1.6)
P 		32.6
(-3)
P 		49.9
(-0.4)
P 		45.8
(-1.1)
P 		41
C 112.8
(3)
P 		63.7
(-0.2)
P 		83.8
(1.1)
P 		20.7
(-3)
P 		46.7
(-1.3)
P 		36.1
(-2)
P 		92
avr 70.2
(3) 		64.3
(2.1) 		65.1
(2.2) 		31.5
(-3) 		44.7
(-1) 		39.1
(-1.8) 		39
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173862_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.24877
Sequence Type Exemplar sequence
Representative Public ID AV203402 NCBI
Target Description AV203402 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F15E6.6 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV203402 /WB_GENE_ID=F15E6.6 /WP=CE27966 /CHR=4 /FEA=Genomic Cluster /DEF=xanthine dehydrogenase; Caenorhabditis elegans cDNA clone:yk576a1 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068130(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068130 NCBI Caenorhabditis elegans F15E6.6 (F15E6.6) mRNA, complete cds. 11/11 None
SNAP00000035360 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4278959:4284111:-1 11/11 None
GENEFINDER00000035378 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4278970:4284111:-1 11/11 None
F15E6.6 ENSEMBL cdna:known chromosome:CEL140:IV:4278932:4284111:-1 gene:F15E6.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4278948-4284118(-) 100.0 100.0
Public Domain and Genome References
Gene Title xanthine dehydrogenase
Ensembl F15E6.6
Entrez Gene 177192 Entrez gene
SwissProt O61198 EMBL-EBI
WormBase CE27966 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_500531 F15E6.6 [Caenorhabditis elegans] gb|AAB92058.2| Hypothetical protein F15E6.6 [Caenorhabditis elegans] 0.0
blast AAK71353 Hypothetical protein B0222.9 [Caenorhabditis elegans] ref|NP_505377.2| B0222.9 [Caenorhabditis elegans] 0.0
blast CAE72122 Hypothetical protein CBG19218 [Caenorhabditis briggsae] 0.0
blast CAE72123 Hypothetical protein CBG19219 [Caenorhabditis briggsae] 0.0
blast T29967 hypothetical protein F36A4.15 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002346 EMBL-EBI Molybdopterin dehydrogenase, FAD-binding 0.0021
Pfam IPR000674 EMBL-EBI Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead 5.8E-58
Pfam IPR001041 EMBL-EBI Ferredoxin 2.9E-12
Pfam IPR008274 EMBL-EBI Aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding 1.0E-126
Pfam IPR002888 EMBL-EBI [2Fe-2S]-binding 2.4E-60
Pfam IPR008274 EMBL-EBI Aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding 1.0E-126
Pfam IPR000674 EMBL-EBI Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead 5.8E-58
Pfam IPR008274 EMBL-EBI Aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding 1.0E-126
Pfam IPR000674 EMBL-EBI Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead 5.8E-58
Sequence
Target Sequence 
>C. ELEGANS:173862_S_AT
ggagcctatgttccattgcagtgcacagaatatggatgggttgaccgggaaaaactcagc
attggtgagtttgagtacccttataatacaacaggagcctgtgcagtagaaatggaagtc
gacacaatgactggatacaaccgtctgctccgtgtggacattgtcatggatgtcggagag
agcttgaatcctgccatcgacattggacagatcgaaggagcattcatgcagggatacggg
ctcgtcacttgtgaaaaaataactttcaataaagaaactggacaactgaatcaaaactcg
gcgggacaatacaaaataccgaagtctagtgatgttccgaaagactttagagtgaagctc
ctgggtattaacaaggcaaatggagcaaaagtatactcatcaaaaggaattggtgaacca
ccactgatgatgtcatgtggagctgttcattcgtgtattatgaattgtattgatgattgg
agaaaggagaatggaatcgataaatttgtggatacaatctcaccactcagcgctgacaag
attcaagagctctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGCCTATGTTCCATTGCAGTGCA 251 521 3161 Antisense
GTCGGAGAGAGCTTGAATCCTGCCA 557 471 3332 Antisense
GAATCCTGCCATCGACATTGGACAG 308 329 3346 Antisense
GCATTCATGCAGGGATACGGGCTCG 614 303 3380 Antisense
GATACGGGCTCGTCACTTGTGAAAA 185 425 3393 Antisense
CAACTGAATCAAAACTCGGCGGGAC 26 187 3443 Antisense
TACCGAAGTCTAGTGATGTTCCGAA 271 649 3477 Antisense
GAGTGAAGCTCCTGGGTATTAACAA 297 401 3510 Antisense
GTGGAGCTGTTCATTCGTGTATTAT 235 491 3597 Antisense
GTGGATACAATCTCACCACTCAGCG 371 487 3668 Antisense
GCGCTGACAAGATTCAAGAGCTCTG 250 287 3690 Antisense
Sequence Source Affymetrix Proprietary Database