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[173860_s_at] Yeast hypothetical 65.2 KD protein like

Description C45376 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F25H9.6 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C45376 /WB_GENE_ID=F25H9.6 /WP=CE09663 /CHR=5 /FEA=Genomic Cluster /DEF=Yeast hypothetical 65.2 KD protein like; C.elegans cDNA clone yk393e9 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 77      6grp_high1_10_10 > 87      4grp_highest_8_8 > 59      4grp_high_8_8 > 25      6grp_highest_nonorm > 92      6grp_total > 77      4grp_total > 38      6grp_highest_sub > Da      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 94
1 2 3 4 range
A 202.8
(3)
P 		145.3
(-3)
P 		162.2
(-1.2)
P 		195
(2.2)
P 		58
B 220.2
(3)
P 		174.1
(-0)
P 		160.9
(-0.9)
P 		128.5
(-3)
P 		92
C 222.3
(3)
P 		192
(0.2)
P 		156.4
(-3)
P 		210.5
(1.9)
P 		66
avr 215.1
(3) 		170.5
(-1.8) 		159.8
(-3) 		178
(-1) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 421
1 2 3 4 5 6 range
A 250.1
(-1.9)
P 		191.3
(-3)
P 		227
(-2.4)
P 		274.8
(-1.5)
P 		289.1
(-1.2)
P 		523.1
(3)
P 		332
B 285
(-2.2)
P 		258.4
(-2.6)
P 		234.7
(-3)
P 		275.1
(-2.3)
P 		390.6
(-0.4)
P 		594.1
(3)
P 		359
C 252.7
(-2.5)
P 		221.3
(-3)
P 		283.9
(-2)
P 		332.3
(-1.3)
P 		339.3
(-1.2)
P 		612
(3)
P 		391
avr 262.6
(-2.3) 		223.7
(-3) 		248.5
(-2.6) 		294.1
(-1.8) 		339.7
(-1) 		576.4
(3) 		353
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 73.8
(3)
P 		31.5
(-2.6)
P 		42.4
(-1.2)
P 		28.5
(-3)
P 		45
B 70.2
(3)
P 		43
(-0.8)
P 		37.3
(-1.6)
P 		27.4
(-3)
P 		43
C 73.6
(3)
P 		55.2
(0.1)
P 		54.5
(-0)
P 		35.5
(-3)
P 		38
avr 72.5
(3) 		43.2
(-1.2) 		44.7
(-1) 		30.5
(-3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 175
1 2 3 4 5 6 range
A 46.1
(-3)
P 		68
(-1.4)
P 		49.4
(-2.8)
P 		69.7
(-1.3)
P 		87.2
(0)
P 		127.4
(3)
P 		81
B 99.2
(-1.5)
P 		86
(-1.9)
P 		57
(-3)
P 		72.9
(-2.4)
P 		158.7
(0.7)
P 		221.5
(3)
P 		165
C 93.7
(-1.8)
P 		67.5
(-3)
P 		72.3
(-2.8)
P 		66.8
(-3)
P 		109.8
(-1.1)
P 		204.9
(3)
P 		138
avr 79.7
(-2) 		73.8
(-2.3) 		59.6
(-3) 		69.8
(-2.5) 		118.6
(-0.2) 		184.6
(3) 		125
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173860_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25617
Sequence Type Exemplar sequence
Representative Public ID C45376 NCBI
Target Description C45376 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F25H9.6 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C45376 /WB_GENE_ID=F25H9.6 /WP=CE09663 /CHR=5 /FEA=Genomic Cluster /DEF=Yeast hypothetical 65.2 KD protein like; C.elegans cDNA clone yk393e9 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073940(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073940 NCBI Caenorhabditis elegans F25H9.6 (F25H9.6) mRNA, complete cds. 11/11 None
SNAP00000006466 ENSEMBL cdna:SNAP chromosome:CEL140:V:13469772:13470859:-1 11/11 None
GENEFINDER00000006472 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13469772:13470859:-1 11/11 None
F25H9.6 ENSEMBL cdna:known chromosome:CEL140:V:13469580:13470859:-1 gene:F25H9.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13469590-13470860(-) 100.0 100.0
Public Domain and Genome References
Gene Title Yeast hypothetical 65.2 KD protein like
Ensembl F25H9.6
Entrez Gene 179829 Entrez gene
SwissProt P91988 EMBL-EBI
WormBase CE09663 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:257897_AT halotolerance protein (HAL3A) at
CANINE_2:CFAAFFX.27548.1.S1_AT similar to Phosphopantothenoylcysteine decarboxylase (PPC-DC) (CoaC) cfa
DROSOPHILA_2:1625725_AT dm
CHICKEN:GGA.9740.1.S1_AT similar to RIKEN cDNA 8430432M10 gga
HG-U133_PLUS_2:219066_AT phosphopantothenoylcysteine decarboxylase hs
HG-U133A:219066_AT phosphopantothenoylcysteine decarboxylase hs
HG-U133A_2:219066_AT phosphopantothenoylcysteine decarboxylase hs
HU35KSUBA:RC_AA234976_AT phosphopantothenoylcysteine decarboxylase hs
U133_X3P:G11141896_3P_AT phosphopantothenoylcysteine decarboxylase hs
HG-U95B:43058_S_AT phosphopantothenoylcysteine decarboxylase hs
HG-U95C:61323_AT phosphopantothenoylcysteine decarboxylase hs
HG-U95C:66574_AT phosphopantothenoylcysteine decarboxylase hs
MG-U74BV2:109132_AT phosphopantothenoylcysteine decarboxylase mm
MOE430A:1424335_AT phosphopantothenoylcysteine decarboxylase mm
MOUSE430A_2:1424335_AT phosphopantothenoylcysteine decarboxylase mm
MOUSE430_2:1424335_AT phosphopantothenoylcysteine decarboxylase mm
MOE430A:1424336_AT phosphopantothenoylcysteine decarboxylase mm
MOUSE430A_2:1424336_AT phosphopantothenoylcysteine decarboxylase mm
MOUSE430_2:1424336_AT phosphopantothenoylcysteine decarboxylase mm
MU19KSUBC:TC34986_AT Phosphopantothenoylcysteine decarboxylase, mRNA (cDNA clone IMAGE:3257493) mm
RAE230A:1373236_AT similar to RIKEN cDNA 8430432M10 (predicted) rn
RAT230_2:1373236_AT similar to RIKEN cDNA 8430432M10 (predicted) rn
RG-U34C:RC_AA818126_AT Similar to RIKEN cDNA 8430432M10 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAB02993 Hypothetical protein F25H9.6 [Caenorhabditis elegans] ref|NP_506341.1| F25H9.6 [Caenorhabditis elegans] 1.0E-134
blast CAB02993 Hypothetical protein F25H9.6 [Caenorhabditis elegans] ref|NP_506341.1| F25H9.6 [Caenorhabditis elegans] 1.0E-101
blast CAE62583 Hypothetical protein CBG06697 [Caenorhabditis briggsae] 2.0E-96
blast CAE62583 Hypothetical protein CBG06697 [Caenorhabditis briggsae] 1.0E-71
blast NP_789801 phosphopantothenoylcysteine decarboxylase [Mus musculus] gb|AAH52928.1| Phosphopantothenoylcysteine decarboxylase [Mus musculus] gb|AAH89351.1| Phosphopantothenoylcysteine decarboxylase [Mus musculus] dbj|BAC29285.1| unnamed protein product [Mus musculus] sp|Q8BZB2|COAC_MOUSE Phosphopantothenoylcysteine decarboxylase (PPC-DC) (CoaC) 2.0E-45
Protein Domains
Database ID Description E-Value
Pfam IPR003382 EMBL-EBI Flavoprotein 3.9E-45
Pfam IPR003382 EMBL-EBI Flavoprotein 3.0E-7
Pfam IPR003382 EMBL-EBI Flavoprotein 8.4E-22
Sequence
Target Sequence 
>C. ELEGANS:173860_S_AT
aaatgggcagattccgctttgattgcacctctcgacgcgaataccatggcaaaaatcgca
aacggcttgtgcgataatctcgtaacctcaatcatcagagcttgggatctatcgaaaccg
tgctattttgctccagcaatgaacactcatatgtgggagaatcctcttacaatgcaacat
cggacagttctcaagtctcaattgaaattcaaggaaatctgtccaattcaaaaagagttg
atttgtggagatgttggaaccggtgcgatggcttcaatcggcacgatcgtttcacttgtt
gcagcacttgtcagggatcagcaggcagttcgcatccaatgcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATGGGCAGATTCCGCTTTGATTG 278 121 380 Antisense
CTCTCGACGCGAATACCATGGCAAA 480 231 408 Antisense
ATAATCTCGTAACCTCAATCATCAG 411 25 453 Antisense
TATCGAAACCGTGCTATTTTGCTCC 668 655 489 Antisense
GGAGAATCCTCTTACAATGCAACAT 649 519 535 Antisense
AACATCGGACAGTTCTCAAGTCTCA 666 137 555 Antisense
TTGGAACCGGTGCGATGGCTTCAAT 11 613 633 Antisense
GCGATGGCTTCAATCGGCACGATCG 180 291 644 Antisense
GGCACGATCGTTTCACTTGTTGCAG 501 535 659 Antisense
GTTGCAGCACTTGTCAGGGATCAGC 443 439 677 Antisense
CAGCAGGCAGTTCGCATCCAATGCG 146 205 698 Antisense
Sequence Source Affymetrix Proprietary Database