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[173858_at] protein tyrosine phosphatase

Description CEK036FXR_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F44G4.8 /5_PRIME_EXT_DB=WormBase Gene ID /GB=D33816 /WB_GENE_ID=F44G4.8 /WP=CE03335 /CHR=2 /FEA=Genomic Cluster /DEF=protein tyrosine phosphatase; C.elegans cDNA clone yk36f10 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 42      6grp_high1_10_10 > 24      4grp_highest_8_8 > 59      4grp_high_8_8 > 25      6grp_highest_nonorm > 31      6grp_total > 02      4grp_total > 38      6grp_highest_sub > 02      6grp_cgc > 52      6grp_high1_sub > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 613
1 2 3 4 range
A 1213.1
(3)
P 		783.1
(-1.5)
P 		638.1
(-3)
P 		743.7
(-1.9)
P 		575
B 1127.1
(3)
P 		771.5
(-1)
P 		600.1
(-3)
P 		868
(0.1)
P 		527
C 1130.5
(3)
P 		749.3
(-2.2)
P 		686.8
(-3)
P 		689.9
(-3)
P 		444
avr 1156.9
(3) 		768
(-1.5) 		641.7
(-3) 		767.2
(-1.5) 		515

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 611
1 2 3 4 5 6 range
A 790.5
(-1.5)
P 		1119.4
(3)
P 		683.8
(-3)
P 		740.9
(-2.2)
P 		844.6
(-0.8)
P 		804.1
(-1.3)
P 		436
B 988.4
(2.2)
P 		1054
(3)
P 		585.5
(-2.6)
P 		787.5
(-0.2)
P 		772.5
(-0.4)
P 		554.4
(-3)
P 		500
C 958.2
(3)
P 		922
(2.5)
P 		881.4
(2)
P 		726
(-0.1)
P 		778.7
(0.6)
P 		508.4
(-3)
P 		450
avr 912.4
(1.3) 		1031.8
(3) 		716.9
(-1.6) 		751.5
(-1.1) 		798.6
(-0.4) 		622.3
(-3) 		410
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 333
1 2 3 4 range
A 441.7
(3)
P 		170
(-1.9)
P 		166.8
(-2)
P 		108.9
(-3)
P 		333
B 359.4
(3)
P 		190.6
(-1.6)
P 		139
(-3)
P 		185
(-1.7)
P 		220
C 374.2
(3)
P 		215.4
(-0.7)
P 		239.4
(-0.1)
P 		116.3
(-3)
P 		258
avr 391.8
(3) 		192
(-1.7) 		181.7
(-1.9) 		136.7
(-3) 		255

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 256
1 2 3 4 5 6 range
A 145.7
(-3)
P 		398.1
(3)
P 		148.9
(-2.9)
P 		187.9
(-2)
P 		254.9
(-0.4)
P 		195.8
(-1.8)
P 		252
B 343.9
(2.8)
P 		350.8
(3)
P 		142.2
(-3)
P 		208.6
(-1.1)
P 		313.9
(1.9)
P 		206.7
(-1.1)
P 		209
C 355.1
(3)
P 		281.3
(0.9)
P 		224.3
(-0.8)
P 		146
(-3)
P 		252
(0)
P 		170.2
(-2.3)
P 		209
avr 281.6
(0.8) 		343.4
(3) 		171.8
(-3) 		180.8
(-2.7) 		273.6
(0.6) 		190.9
(-2.3) 		172
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173858_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.23402
Sequence Type Exemplar sequence
Representative Public ID CEK036FXR NCBI
Target Description CEK036FXR_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F44G4.8 /5_PRIME_EXT_DB=WormBase Gene ID /GB=D33816 /WB_GENE_ID=F44G4.8 /WP=CE03335 /CHR=2 /FEA=Genomic Cluster /DEF=protein tyrosine phosphatase; C.elegans cDNA clone yk36f10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063524(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063524 NCBI Caenorhabditis elegans F44G4.8 (dep-1) mRNA, complete cds. 11/11 None
F44G4.8 ENSEMBL cdna:known chromosome:CEL140:II:9005705:9019676:-1 gene:F44G4.8 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9005723-9019674(-) 99.98 100.0
Public Domain and Genome References
Gene Title protein tyrosine phosphatase
Gene Symbol dep-1
Ensembl F44G4.8
Entrez Gene 174437 Entrez gene
SwissProt Q20120 EMBL-EBI
WormBase CE03335 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1627599_AT Protein tyrosine phosphatase 4E dm
DROSGENOME1:151532_AT Protein tyrosine phosphatase 4E dm
DROSOPHILA_2:1637627_AT Protein tyrosine phosphatase 4E dm
DROSOPHILA_2:1631741_A_AT Protein tyrosine phosphatase 4E dm
DROSGENOME1:142338_AT Protein tyrosine phosphatase 4E dm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6470 protein amino acid dephosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4721 phosphoprotein phosphatase activity inferred from electronic annotation QuickGO AmiGO
4725 protein tyrosine phosphatase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA90958 Hypothetical protein F44G4.8 [Caenorhabditis elegans] emb|CAA90125.1| Hypothetical protein F44G4.8 [Caenorhabditis elegans] ref|NP_495925.1| F44G4.8 [Caenorhabditis elegans] 0.0
blast CAE59787 Hypothetical protein CBG03240 [Caenorhabditis briggsae] 0.0
blast AAA28952 receptor-linked protein tyrosine phosphatase 2.0E-87
Protein Domains
Database ID Description E-Value
Pfam IPR003961 EMBL-EBI Fibronectin, type III 1.0E-15
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 1.3E-119
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495925.1 1 901-923
F44G4.8 1 901-923
Sequence
Target Sequence 
>C. ELEGANS:173858_AT
gagaaaccccttctctacatttttgttatttttctccggatacttacctctttctagtcc
gctattcttcatctttccttttcaattttccgttttttccttcattttgtggtttccacg
ggtagctcatctttgttttttctctctttccttcactccatctcttccgtgactcctccc
attttctgtatatcaacccctcaattcatggagattatcaattctttcaaaaaacgcgat
gttatatacgggtcaccctaacacatgagaacatctattcattgtatgtaacatgtactt
ctttattt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGAAACCCCTTCTCTACATTTTTG 74 391 4119 Antisense
CGGATACTTACCTCTTTCTAGTCCG 85 243 4155 Antisense
TCCTTCATTTTGTGGTTTCCACGGG 542 589 4216 Antisense
CACGGGTAGCTCATCTTTGTTTTTT 602 199 4235 Antisense
CTCCTCCCATTTTCTGTATATCAAC 213 235 4291 Antisense
GTATATCAACCCCTCAATTCATGGA 230 453 4306 Antisense
CATGGAGATTATCAATTCTTTCAAA 547 209 4325 Antisense
CGCGATGTTATATACGGGTCACCCT 444 253 4353 Antisense
GGGTCACCCTAACACATGAGAACAT 572 491 4368 Antisense
GAGAACATCTATTCATTGTATGTAA 205 393 4385 Antisense
GTATGTAACATGTACTTCTTTATTT 58 457 4402 Antisense
Sequence Source Affymetrix Proprietary Database