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[173854_s_at]

Description C51321_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F15A8.5 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C51321 /WB_GENE_ID=F15A8.5 /WP=CE09403 /CHR=X /FEA=Genomic Cluster /DEF=G-protein coupled receptor; C.elegans cDNA clone yk192h11 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 02      4grp_high_8_8 > 03      6grp_total > 27      4grp_total > 13      6grp_cgc > 15      6grp_high1_sub > De      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 223
1 2 3 4 range
A 236.3
(0.6)
P 		127.6
(-3)
P 		147
(-2.4)
P 		309.2
(3)
P 		182
B 188
(-0.6)
P 		114.4
(-2.6)
P 		99.2
(-3)
A 		322.6
(3)
P 		223
C 236.4
(1.8)
P 		152
(-1.6)
P 		115.8
(-3)
P 		267.1
(3)
P 		151
avr 220.2
(0.3) 		131.3
(-2.6) 		120.7
(-3) 		299.6
(3) 		179

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 146
1 2 3 4 5 6 range
A 216
(3)
P 		137.6
(-0.2)
P 		149.3
(0.2)
P 		70.7
(-3)
A 		136.5
(-0.3)
P 		160.2
(0.7)
M 		145
B 200.9
(3)
P 		198.9
(2.9)
P 		75.2
(-3)
A 		127.4
(-0.5)
M 		106.5
(-1.5)
P 		162.8
(1.2)
P 		126
C 216.3
(3)
P 		186.7
(1.4)
P 		170.7
(0.5)
P 		173.7
(0.7)
P 		105.9
(-3)
P 		121.4
(-2.2)
P 		110
avr 211.1
(3) 		174.4
(0.7) 		131.7
(-2) 		123.9
(-2.5) 		116.3
(-3) 		148.1
(-1) 		95
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 86
(3)
P 		27.7
(-3)
P 		38.4
(-1.9)
P 		45.3
(-1.2)
P 		58
B 59.9
(1.8)
P 		28.2
(-2.3)
P 		23
(-3)
A 		68.7
(3)
P 		46
C 78.3
(3)
P 		43.7
(-2.5)
P 		40.4
(-3)
P 		45
(-2.3)
P 		38
avr 74.7
(3) 		33.2
(-3) 		33.9
(-2.9) 		53
(-0.1) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 39.8
(1.2)
P 		49
(3)
P 		32.5
(-0.2)
P 		17.9
(-3)
A 		41.2
(1.5)
P 		39
(1.1)
M 		31
B 69.9
(3)
P 		66.2
(2.6)
P 		18.3
(-3)
A 		33.7
(-1.2)
M 		43.3
(-0.1)
P 		60.7
(1.9)
P 		52
C 80.2
(3)
P 		57
(-0)
P 		43.4
(-1.8)
P 		34.9
(-2.9)
P 		34.3
(-3)
P 		40.6
(-2.2)
P 		46
avr 63.3
(3) 		57.4
(2) 		31.4
(-2.5) 		28.8
(-3) 		39.6
(-1.1) 		46.8
(0.1) 		35
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173854_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25822
Sequence Type Exemplar sequence
Representative Public ID C51321 NCBI
Target Description C51321_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F15A8.5 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C51321 /WB_GENE_ID=F15A8.5 /WP=CE09403 /CHR=X /FEA=Genomic Cluster /DEF=G-protein coupled receptor; C.elegans cDNA clone yk192h11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029407(10), NM_001029408(10), NM_001029406(10), NM_001029409(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029407 NCBI Caenorhabditis elegans DOPamine receptor family member (dop-1) (dop-1) mRNA, complete cds. 10/11 None
NM_001029408 NCBI Caenorhabditis elegans DOPamine receptor family member (dop-1) (dop-1) mRNA, complete cds. 10/11 None
NM_001029406 NCBI Caenorhabditis elegans DOPamine receptor family member (dop-1) (dop-1) mRNA, complete cds. 10/11 None
NM_001029409 NCBI Caenorhabditis elegans DOPamine receptor family member (dop-1) (dop-1) mRNA, complete cds. 10/11 None
GENEFINDER00000015910 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:4411564:4418799:-1 10/11 None
F15A8.5b ENSEMBL cdna:known chromosome:CEL140:X:4411353:4416043:-1 gene:F15A8.5 10/11 A 
F15A8.5c ENSEMBL cdna:known chromosome:CEL140:X:4411564:4416043:-1 gene:F15A8.5 10/11 None
F15A8.5d ENSEMBL cdna:known chromosome:CEL140:X:4411564:4413898:-1 gene:F15A8.5 10/11 None
F15A8.5a ENSEMBL cdna:known chromosome:CEL140:X:4411564:4416043:-1 gene:F15A8.5 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000015906 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4411364-4416499(-) 100.0 100.0
Public Domain and Genome References
Ensembl F15A8.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_001024578 DOPamine receptor family member (dop-1) [Caenorhabditis elegans] gb|AAO91737.1| Dopamine receptor protein 1, isoform b [Caenorhabditis elegans] 0.0
blast NP_001024579 DOPamine receptor family member (dop-1) [Caenorhabditis elegans] gb|AAO91738.1| Dopamine receptor protein 1, isoform c [Caenorhabditis elegans] 0.0
blast NP_001024577 DOPamine receptor family member (dop-1) [Caenorhabditis elegans] gb|AAO91736.1| Dopamine receptor protein 1, isoform a [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 2.6E-85
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 2.1E-23
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 2.5E-88
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 9.4E-84
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001024578.1 7 10-32,43-65,80-102,123-145,173-195,269-288,303-325
NP_001024579.1 7 10-32,43-65,80-102,123-145,173-195,269-288,303-325
NP_001024577.1 7 10-32,43-65,80-102,123-145,173-195,327-346,361-383
NP_001024580.1 2 79-98,113-135
F15A8.5b 7 10-32,43-65,80-102,123-145,173-195,269-288,303-325
F15A8.5c 7 10-32,43-65,80-102,123-145,173-195,269-288,303-325
F15A8.5d 2 79-98,113-135
F15A8.5a 7 10-32,43-65,80-102,123-145,173-195,327-346,361-383
GENEFINDER00000015910 8 89-106,116-138,151-173,188-210,231-253,281-303,512-531,546-568
Sequence
Target Sequence 
>C. ELEGANS:173854_S_AT
gcatcatttttcagtcttacattgggtgttattatgggaaccttccttgtgtgctggctt
ccgttcttcacagtaaacattttgagagcttggctccccgaaattttcagctctaaaaca
attatggcagtaacctggttaggatacgcaaactcttctgccaatccattaatctatagc
attttcaatcgtgactttagacgagcattcaagaagattattgtcagagttttcggatgc
tgttgggaagagcctgatctaaataagtcaagctcgtcaagatatgctgctcctgacaat
atagaacgacggcgttcatgcacacggtcttccgagtcagctcacgacaataacaacgat
gcgaatgcaactcgcctgaatcttctttcgaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCATCATTTTTCAGTCTTACATTGG 245 309 857 Antisense
TTATGGGAACCTTCCTTGTGTGCTG 470 681 888 Antisense
TGGCTTCCGTTCTTCACAGTAAACA 607 543 911 Antisense
CATTTTGAGAGCTTGGCTCCCCGAA 67 215 934 Antisense
GCTCCCCGAAATTTTCAGCTCTAAA 406 297 949 Antisense
GGATACGCAAACTCTTCTGCCAATC 176 511 998 Antisense
TCAAGATATGCTGCTCCTGACAATA 124 633 1133 Antisense
AGAACGACGGCGTTCATGCACACGG 120 73 1159 Antisense
TCTTCCGAGTCAGCTCACGACAATA 512 617 1184 Antisense
CAACGATGCGAATGCAACTCGCCTG 495 187 1210 Antisense
AACTCGCCTGAATCTTCTTTCGAAT 658 139 1225 Antisense
Sequence Source Affymetrix Proprietary Database