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[173853_at]

Description C51321_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F15A8.5 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C51321 /WB_GENE_ID=F15A8.5 /WP=CE09403 /CHR=X /FEA=Genomic Cluster /DEF=G-protein coupled receptor; C.elegans cDNA clone yk192h11 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 61      6grp_high1_10_10 > 26      4grp_highest_8_8 > 46      4grp_high_8_8 > 10      6grp_highest_nonorm > 90      6grp_total > 27      4grp_total > 22      6grp_highest_sub > De      6grp_cgc > 04      6grp_high1_sub > De      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 255
1 2 3 4 range
A 324.8
(2.9)
P 		89
(-2.8)
P 		80.6
(-3)
P 		329.9
(3)
P 		249
B 216.6
(0.4)
P 		126.6
(-1.7)
P 		74.6
(-3)
P 		323.4
(3)
P 		249
C 302.1
(3)
P 		135.5
(-1.9)
P 		97.5
(-3)
P 		298.6
(2.9)
P 		205
avr 281.2
(2.1) 		117
(-2.2) 		84.2
(-3) 		317.3
(3) 		233

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 235
1 2 3 4 5 6 range
A 262.4
(3)
P 		179.2
(0.6)
P 		127
(-0.9)
P 		51.4
(-3)
P 		124.4
(-0.9)
P 		106.9
(-1.4)
P 		211
B 286.4
(3)
P 		252.3
(2)
P 		89.5
(-2.9)
P 		86
(-3)
P 		147.1
(-1.2)
P 		154
(-1)
P 		200
C 221
(3)
P 		181.7
(1.4)
P 		71.6
(-3)
P 		107.8
(-1.5)
P 		86.1
(-2.4)
P 		124.8
(-0.9)
P 		149
avr 256.6
(3) 		204.4
(1.2) 		96
(-2.5) 		81.7
(-3) 		119.2
(-1.7) 		128.6
(-1.4) 		175
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 101
1 2 3 4 range
A 118.3
(3)
P 		19.3
(-3)
P 		21.1
(-2.9)
P 		48.3
(-1.2)
P 		99
B 69.1
(3)
P 		31.3
(-1.4)
P 		17.3
(-3)
P 		68.9
(3)
P 		52
C 100
(3)
P 		38.9
(-2.6)
P 		34
(-3)
P 		50.4
(-1.5)
P 		66
avr 95.8
(3) 		29.8
(-2.5) 		24.1
(-3) 		55.9
(-0.3) 		72

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 87
1 2 3 4 5 6 range
A 48.4
(1.2)
P 		63.7
(3)
P 		27.7
(-1.3)
P 		13
(-3)
P 		37.5
(-0.1)
P 		26
(-1.5)
P 		51
B 99.7
(3)
P 		84
(1.8)
P 		21.7
(-3)
P 		22.8
(-2.9)
P 		59.8
(-0.1)
P 		57.4
(-0.3)
P 		78
C 81.9
(3)
P 		55.5
(0.5)
P 		18.2
(-3)
P 		21.7
(-2.7)
P 		27.9
(-2.1)
P 		41.8
(-0.8)
P 		64
avr 76.7
(3) 		67.7
(2.1) 		22.5
(-2.7) 		19.2
(-3) 		41.7
(-0.7) 		41.7
(-0.7) 		58
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173853_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25822
Sequence Type Exemplar sequence
Representative Public ID C51321 NCBI
Target Description C51321_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F15A8.5 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C51321 /WB_GENE_ID=F15A8.5 /WP=CE09403 /CHR=X /FEA=Genomic Cluster /DEF=G-protein coupled receptor; C.elegans cDNA clone yk192h11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029407(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029407 NCBI Caenorhabditis elegans DOPamine receptor family member (dop-1) (dop-1) mRNA, complete cds. 11/11 None
F15A8.5b ENSEMBL cdna:known chromosome:CEL140:X:4411353:4416043:-1 gene:F15A8.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
180714 4 1 NM_001029407 173853_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4411364-4416499(-) 100.0 100.0
Public Domain and Genome References
Ensembl F15A8.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_001024578 DOPamine receptor family member (dop-1) [Caenorhabditis elegans] gb|AAO91737.1| Dopamine receptor protein 1, isoform b [Caenorhabditis elegans] 0.0
blast NP_001024579 DOPamine receptor family member (dop-1) [Caenorhabditis elegans] gb|AAO91738.1| Dopamine receptor protein 1, isoform c [Caenorhabditis elegans] 0.0
blast T25689 hypothetical protein F15A8.5 - Caenorhabditis elegans 1.0E-174
Protein Domains
Database ID Description E-Value
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 2.6E-85
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001024578.1 7 10-32,43-65,80-102,123-145,173-195,269-288,303-325
F15A8.5b 7 10-32,43-65,80-102,123-145,173-195,269-288,303-325
Sequence
Target Sequence 
>C. ELEGANS:173853_AT
accattccggaatagactttcaaattttccagttttattgcatgctttctttattcaatt
acccttcaacaacgaaacaaatctcttttttctacgaggttccttttccagtttggtctc
atttttcatctgtttctgtttatttgtgttttgctctttttgtggttcataatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACCATTCCGGAATAGACTTTCAAAT 177 3 1262 Antisense
TTTCCAGTTTTATTGCATGCTTTCT 665 669 1287 Antisense
GCATGCTTTCTTTATTCAATTACCC 219 311 1301 Antisense
TTATTCAATTACCCTTCAACAACGA 142 677 1312 Antisense
GAAACAAATCTCTTTTTTCTACGAG 215 355 1335 Antisense
TCTACGAGGTTCCTTTTCCAGTTTG 491 225 1352 Antisense
TCCTTTTCCAGTTTGGTCTCATTTT 57 593 1362 Antisense
GTCTCATTTTTCATCTGTTTCTGTT 200 471 1377 Antisense
TTTTCATCTGTTTCTGTTTATTTGT 237 677 1384 Antisense
GTTTATTTGTGTTTTGCTCTTTTTG 573 449 1399 Antisense
TTTGCTCTTTTTGTGGTTCATAATT 315 669 1411 Antisense
Sequence Source Affymetrix Proprietary Database