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[173852_s_at] beta transducin like protein

Description CEC3812 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=D1054.15 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C09381 /WB_GENE_ID=D1054.15 /WP=CE05533 /CHR=5 /FEA=Genomic Cluster /DEF=beta transducin like protein; C.elegans cDNA clone yk167f1 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 68      6grp_high1_10_10 > 96      4grp_highest_8_8 > 33      4grp_high_8_8 > 59      6grp_highest_nonorm > 88      6grp_total > 87      4grp_total > 61      6grp_highest_sub > In      6grp_cgc > 68      6grp_high1_sub > In      6grp_cgc_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 497
1 2 3 4 range
A 1276.7
(3)
P 		1076.9
(-0.2)
P 		1212.6
(2)
P 		906.4
(-3)
P 		370
B 1239
(1.6)
P 		1314.2
(3)
P 		1276.4
(2.3)
P 		999.4
(-3)
P 		315
C 1304.9
(2.5)
P 		1158.2
(0.7)
P 		1346.9
(3)
P 		850.4
(-3)
P 		497
avr 1273.5
(2.9) 		1183.1
(1.4) 		1278.6
(3) 		918.7
(-3) 		360

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1182
1 2 3 4 5 6 range
A 952
(-3)
P 		1024.1
(-2.4)
P 		1109.3
(-1.8)
P 		1271.1
(-0.5)
P 		1353.5
(0.1)
P 		1725.5
(3)
P 		774
B 1020.3
(-2.1)
P 		881.2
(-3)
P 		1285.2
(-0.3)
P 		1303.5
(-0.2)
P 		1480.2
(1)
P 		1784.1
(3)
P 		903
C 1081.3
(-2.4)
P 		971.2
(-3)
P 		1260.8
(-1.4)
P 		1288.7
(-1.3)
P 		1523.5
(0)
P 		2063
(3)
P 		1092
avr 1017.9
(-2.6) 		958.8
(-3) 		1218.4
(-1.3) 		1287.8
(-0.8) 		1452.4
(0.3) 		1857.5
(3) 		899
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 337
1 2 3 4 range
A 464.9
(3)
P 		233.8
(-1.2)
P 		317
(0.3)
P 		132.7
(-3)
P 		332
B 395.1
(3)
P 		324.6
(0.7)
P 		295.8
(-0.3)
P 		213
(-3)
P 		182
C 432
(2.3)
P 		333
(0.5)
P 		469.4
(3)
P 		143.4
(-3)
P 		326
avr 430.7
(3) 		297.1
(0) 		360.7
(1.4) 		163
(-3) 		268

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 515
1 2 3 4 5 6 range
A 175.5
(-3)
P 		364.2
(1.6)
P 		241.6
(-1.4)
P 		322.4
(0.6)
P 		408.4
(2.7)
P 		420.1
(3)
P 		245
B 355
(-2)
P 		293.3
(-3)
P 		312.1
(-2.7)
P 		345.2
(-2.2)
P 		601.4
(2)
P 		665.3
(3)
P 		372
C 400.8
(-1)
P 		296.3
(-2.5)
P 		320.9
(-2.1)
P 		259.2
(-3)
P 		493
(0.3)
P 		690.6
(3)
P 		431
avr 310.4
(-2.6) 		317.9
(-2.5) 		291.5
(-3) 		308.9
(-2.7) 		500.9
(1.2) 		592
(3) 		301
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173852_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25323
Sequence Type Exemplar sequence
Representative Public ID CEC3812 NCBI
Target Description CEC3812 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=D1054.15 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C09381 /WB_GENE_ID=D1054.15 /WP=CE05533 /CHR=5 /FEA=Genomic Cluster /DEF=beta transducin like protein; C.elegans cDNA clone yk167f1 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073362(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073362 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-135) (tag-135) mRNA, complete cds. 11/11 None
SNAP00000017229 ENSEMBL cdna:SNAP chromosome:CEL140:V:10808783:10809565:-1 11/11 None
D1054.15.1 ENSEMBL cdna:known chromosome:CEL140:V:10808726:10810498:-1 gene:D1054.15 11/11 None
D1054.15.2 ENSEMBL cdna:known chromosome:CEL140:V:10808733:10810485:-1 gene:D1054.15 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10808783-10810482(-) 100.0 100.0
Public Domain and Genome References
Gene Title beta transducin like protein
Gene Symbol tag-135
Ensembl D1054.15
Entrez Gene 179500 Entrez gene
SwissProt Q18295 EMBL-EBI
WormBase CE05533 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:12934_AT PP1/PP2A phosphatases pleiotropic regulator 1 (PRL1) at
ATGENOME1:18548_S_AT PP1/PP2A phosphatases pleiotropic regulator 1 (PRL1) at
ATH1-121501:245358_AT PP1/PP2A phosphatases pleiotropic regulator 1 (PRL1) at
CANINE_2:CFAAFFX.13335.1.S1_S_AT similar to Pleiotropic regulator 1 cfa
CANINE_2:CFAAFFX.13345.1.S1_S_AT similar to Pleiotropic regulator 1 cfa
DROSOPHILA_2:1625006_AT dm
DROSGENOME1:154283_AT dm
CHICKEN:GGA.9982.1.S1_AT pleiotropic regulator 1 (PRL1 homolog, Arabidopsis) gga
U133_X3P:HS.261285.1.S1_3P_AT pleiotropic regulator 1 (PRL1 homolog, Arabidopsis) hs
HG-U133_PLUS_2:225194_AT pleiotropic regulator 1 (PRL1 homolog, Arabidopsis) hs
HG-U133B:225194_AT pleiotropic regulator 1 (PRL1 homolog, Arabidopsis) hs
HG-U95E:91438_AT pleiotropic regulator 1 (PRL1 homolog, Arabidopsis) hs
HG-U133_PLUS_2:238137_AT Pleiotropic regulator 1 (PRL1 homolog, Arabidopsis) hs
HG-U133B:238137_AT Pleiotropic regulator 1 (PRL1 homolog, Arabidopsis) hs
U133_X3P:HS.249996.0.A1_3P_AT Pleiotropic regulator 1 (PRL1 homolog, Arabidopsis) hs
MU11KSUBA:AA230831_S_AT pleiotropic regulator 1, PRL1 homolog (Arabidopsis) mm
MU11KSUBB:MSA.7109.0_S_AT pleiotropic regulator 1, PRL1 homolog (Arabidopsis) mm
MG-U74AV2:101064_AT pleiotropic regulator 1, PRL1 homolog (Arabidopsis) mm
MOE430A:1448282_AT pleiotropic regulator 1, PRL1 homolog (Arabidopsis) mm
MOUSE430A_2:1448282_AT pleiotropic regulator 1, PRL1 homolog (Arabidopsis) mm
MOUSE430_2:1448282_AT pleiotropic regulator 1, PRL1 homolog (Arabidopsis) mm
RG-U34A:RC_AI639353_AT pleiotropic regulator 1 homolog (Arabidopsis) rn
RAE230A:1387823_AT pleiotropic regulator 1 homolog (Arabidopsis) rn
RAT230_2:1387823_AT pleiotropic regulator 1 homolog (Arabidopsis) rn
YEAST_2:1771433_AT Splicing factor that is found in the Cef1p subcomplex of the spliceosome Sc
Protein Similarities
Method ID Description E-Value
blast CAA98448 Hypothetical protein D1054.15 [Caenorhabditis elegans] emb|CAA98247.1| Hypothetical protein D1054.15 [Caenorhabditis elegans] ref|NP_505763.1| Temporarily Assigned Gene name family member (tag-135) [Caenorhabditis elegans] 0.0
blast CAE64899 Hypothetical protein CBG09714 [Caenorhabditis briggsae] 0.0
blast CAD48139 hypothetical protein [Brugia malayi] 0.0
blast CAA98448 Hypothetical protein D1054.15 [Caenorhabditis elegans] emb|CAA98247.1| Hypothetical protein D1054.15 [Caenorhabditis elegans] ref|NP_505763.1| Temporarily Assigned Gene name family member (tag-135) [Caenorhabditis elegans] 1.0E-144
Protein Domains
Database ID Description E-Value
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 3.4E-11
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.6E-10
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 2.0E-9
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.9E-7
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.2E-4
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 2.3E-5
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.038
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 2.0E-9
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.9E-7
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.2E-4
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 2.3E-5
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.038
Sequence
Target Sequence 
>C. ELEGANS:173852_S_AT
ctgcgctcgtgattctacagctagagtttgggatatgagaacaaaagctcaagtccattg
ttttgctggtcacacaaacaccgtcgcagatgttgtgtgtcaatcagttgatccacaagt
aataactgcttctcatgatgcgacagttcgtctatgggatttggccgctggacgttctat
gtgcacattaactcatcacaagaaatcagtgagagctctgacaattcatccacgtctcaa
catgtttgcttctgcttccccagataacatcaaacagtggaaacttcccaaaggagaatt
tatgcagaatctttctggacataatgctattatcaatacactgtcttccaatgatgatgg
tgttgttgtatcaggcgctgacaacggatcgttgtgcttctgggattggagatctggttt
ctgcttccagaaaattcaaacaaagcctcaaccaggatcaatagaatctgaagctgggat
ctacgcttcgtgcttcgacaagacaggtctcaggcttattaccgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTGCGCTCGTGATTCTACAGCTAGA 409 237 868 Antisense
AAGTCCATTGTTTTGCTGGTCACAC 504 157 918 Antisense
ACCGTCGCAGATGTTGTGTGTCAAT 297 89 947 Antisense
GCTTCTCATGATGCGACAGTTCGTC 677 305 995 Antisense
AGCTCTGACAATTCATCCACGTCTC 203 81 1081 Antisense
ACGTCTCAACATGTTTGCTTCTGCT 406 95 1099 Antisense
TGGTGTTGTTGTATCAGGCGCTGAC 92 553 1225 Antisense
AACGGATCGTTGTGCTTCTGGGATT 444 143 1250 Antisense
GATTGGAGATCTGGTTTCTGCTTCC 674 435 1271 Antisense
CTACGCTTCGTGCTTCGACAAGACA 517 225 1348 Antisense
GACAGGTCTCAGGCTTATTACCGCT 140 369 1369 Antisense
Sequence Source Affymetrix Proprietary Database