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[173849_at]

Description CEK087CYR_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F13H10.3 /5_PRIME_EXT_DB=WormBase Gene ID /GB=D64705 /WB_GENE_ID=F13H10.3 /WP=CE27959 /CHR=4 /FEA=Genomic Cluster /DEF=Yeast YEH4 like protein; C.elegans cDNA clone yk87c11 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 57      6grp_high1_10_10 > 75      4grp_highest_8_8 > 35      4grp_high_8_8 > 56      6grp_highest_nonorm > 73      6grp_total > 65      4grp_total > 63      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 352
1 2 3 4 range
A 597.7
(3)
P 		423.9
(-0.1)
P 		550.2
(2.2)
P 		261.7
(-3)
P 		336
B 564.9
(0.7)
P 		487.3
(-3)
P 		518.1
(-1.5)
P 		613.9
(3)
P 		127
C 610.7
(3)
P 		466.6
(-3)
P 		567.5
(1.2)
P 		594.7
(2.3)
P 		144
avr 591.1
(3) 		459.3
(-3) 		545.3
(0.9) 		490.1
(-1.6) 		132

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 599
1 2 3 4 5 6 range
A 343.1
(-3)
P 		453.7
(-1.3)
P 		632.2
(1.4)
P 		467.1
(-1.1)
P 		569.7
(0.5)
P 		733.4
(3)
P 		390
B 362.4
(-3)
P 		501.8
(-1.6)
P 		821.2
(1.7)
P 		596.8
(-0.6)
P 		489
(-1.7)
P 		942
(3)
P 		580
C 464.5
(-2.8)
P 		453.6
(-3)
P 		677.9
(0.7)
P 		646.1
(0.2)
P 		481.9
(-2.5)
P 		817.9
(3)
P 		364
avr 390
(-3) 		469.7
(-1.9) 		710.4
(1.4) 		570
(-0.6) 		513.5
(-1.3) 		831.1
(3) 		441
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 179
1 2 3 4 range
A 217.6
(3)
P 		92
(-1.2)
P 		143.8
(0.5)
P 		38.3
(-3)
P 		179
B 180.1
(3)
P 		120.4
(-3)
P 		120
(-3)
P 		130.8
(-1.9)
P 		60
C 202.2
(3)
P 		134.1
(-1)
P 		197.8
(2.7)
P 		100.3
(-3)
P 		102
avr 200
(3) 		115.5
(-1.6) 		153.9
(0.5) 		89.8
(-3) 		110

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 288
1 2 3 4 5 6 range
A 63.2
(-3)
P 		161.4
(2.1)
P 		137.7
(0.9)
P 		118.5
(-0.1)
P 		171.9
(2.7)
P 		178.6
(3)
P 		115
B 126.1
(-3)
P 		167
(-1.9)
P 		199.4
(-1)
P 		158.1
(-2.1)
P 		198.7
(-1.1)
P 		351.3
(3)
P 		225
C 172.2
(-1.2)
P 		138.4
(-2.6)
P 		172.5
(-1.2)
P 		129.9
(-3)
P 		155.9
(-1.9)
P 		273.8
(3)
P 		144
avr 120.5
(-3) 		155.6
(-1.6) 		169.9
(-1) 		135.5
(-2.4) 		175.5
(-0.8) 		267.9
(3) 		147
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173849_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.24638
Sequence Type Exemplar sequence
Representative Public ID CEK087CYR NCBI
Target Description CEK087CYR_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F13H10.3 /5_PRIME_EXT_DB=WormBase Gene ID /GB=D64705 /WB_GENE_ID=F13H10.3 /WP=CE27959 /CHR=4 /FEA=Genomic Cluster /DEF=Yeast YEH4 like protein; C.elegans cDNA clone yk87c11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171417(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171417 NCBI Caenorhabditis elegans F13H10.3a (F13H10.3) mRNA, complete cds. 11/11 None
F13H10.3a ENSEMBL cdna:known chromosome:CEL140:IV:11012101:11015853:-1 gene:F13H10.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
177997 2 1 NM_171417 173849_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11012120-11015860(-) 99.96 100.0
Public Domain and Genome References
Ensembl F13H10.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92953 Hypothetical protein F13H10.3a [Caenorhabditis elegans] ref|NP_741486.1| F13H10.3a [Caenorhabditis elegans] sp|Q19425|YSPK_CAEEL Hypothetical protein F13H10.3 in chromosome IV 0.0
blast CAD27622 Hypothetical protein F13H10.3b [Caenorhabditis elegans] ref|NP_741487.1| F13H10.3b [Caenorhabditis elegans] 0.0
blast T20863 hypothetical protein F13H10.3 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002422 EMBL-EBI Amino acid/polyamine transporter II 8.9E-12
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_741486.1 11 166-188,193-215,247-269,342-360,372-389,415-437,450-472,496-518,531-553,558-575,596-614
F13H10.3a 11 166-188,193-215,247-269,342-360,372-389,415-437,450-472,496-518,531-553,558-575,596-614
Sequence
Target Sequence 
>C. ELEGANS:173849_AT
tttgtgatctagtcgaatcgtttacaatttacaaagaaaatcagtagtagatcagaattt
tcgtttcaagaaatcaaccaaatcagttcattcattcattttatcactttatcatttgta
ttttcttatcaatctttttttatccctttcccccttcaatcagactaacacctgatctat
tcattttttttcgtttcaaattttccgccaattcaatttcgtgtttcatacattgtctgt
gtatttttgtcatgttacggcgatcgagtttttcgattttttcttgtacaaaattttttc
acttgattccttgtcctatactacggtttccttatatatctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTGTGATCTAGTCGAATCGTTTAC 174 665 1868 Antisense
CAACCAAATCAGTTCATTCATTCAT 355 187 1942 Antisense
TATCACTTTATCATTTGTATTTTCT 586 659 1969 Antisense
CCCCCTTCAATCAGACTAACACCTG 339 261 2017 Antisense
GACTAACACCTGATCTATTCATTTT 455 373 2030 Antisense
ATTTTCCGCCAATTCAATTTCGTGT 321 13 2067 Antisense
ATTTCGTGTTTCATACATTGTCTGT 453 17 2083 Antisense
ATTTTTGTCATGTTACGGCGATCGA 465 15 2110 Antisense
TTTTCACTTGATTCCTTGTCCTATA 414 675 2163 Antisense
GATTCCTTGTCCTATACTACGGTTT 506 433 2172 Antisense
ATACTACGGTTTCCTTATATATCTT 638 23 2185 Antisense
Sequence Source Affymetrix Proprietary Database